Information for 1-TGCTTTATKS (Motif 3)

C G A T A C T G A G T C C G A T A G C T A G C T C G T A A C G T A C G T A T G C
Reverse Opposite:
A T C G G T C A C G T A C G A T C T G A T C G A C G T A A C T G A G T C C G T A
p-value:1e-13
log p-value:-3.164e+01
Information Content per bp:1.783
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif5.44%
Number of Background Sequences with motif502.6
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets46.9 +/- 25.1bp
Average Position of motif in Background49.8 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGCTTTATKS-
TGATTTATGGC
 C G A T A C T G A G T C C G A T A G C T A G C T C G T A A C G T A C G T A T G C A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGCTTTATKS--
TGATTTATGGCC
 C G A T A C T G A G T C C G A T A G C T A G C T C G T A A C G T A C G T A T G C A C G T A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGCTTTATKS--
TGATTTATGGCC
 C G A T A C T G A G T C C G A T A G C T A G C T C G T A A C G T A C G T A T G C A C G T A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGCTTTATKS--
NTGATTTATGGCC
 A C G T C G A T A C T G A G T C C G A T A G C T A G C T C G T A A C G T A C G T A T G C A C G T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGCTTTATKS--
DGWTTTATGRCN
 C G A T A C T G A G T C C G A T A G C T A G C T C G T A A C G T A C G T A T G C A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGCTTTATKS---
--TTTTATGGCTN
 C G A T A C T G A G T C C G A T A G C T A G C T C G T A A C G T A C G T A T G C A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGCTTTATKS-
--TTTTATTGC
 C G A T A C T G A G T C C G A T A G C T A G C T C G T A A C G T A C G T A T G C A C G T
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGCTTTATKS
NGCTN-----
 C G A T A C T G A G T C C G A T A G C T A G C T C G T A A C G T A C G T A T G C
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGCTTTATKS-
-TTTTTATTGG
 C G A T A C T G A G T C C G A T A G C T A G C T C G T A A C G T A C G T A T G C A C G T
A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGCTTTATKS-
-NTTTTATTGG
 C G A T A C T G A G T C C G A T A G C T A G C T C G T A A C G T A C G T A T G C A C G T
A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G