Information for 1-KATCTTGCTGTCC (Motif 2)

A C T G C G T A A C G T A G T C C G A T A C G T A C T G A G T C A G C T A C T G A C G T A G T C G T A C
Reverse Opposite:
A C T G A C T G C G T A A G T C C T G A A C T G A G T C C G T A C G T A A C T G C G T A A C G T T G A C
p-value:1e-13
log p-value:-3.056e+01
Information Content per bp:1.842
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif7.04%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.5 +/- 24.1bp
Average Position of motif in Background66.1 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:KATCTTGCTGTCC--
NNTCCTGCTGTGNNN
 A C T G C G T A A C G T A G T C C G A T A C G T A C T G A G T C A G C T A C T G A C G T A G T C G T A C A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:KATCTTGCTGTCC--
TNTCCTGCTGTGNNG
 A C T G C G T A A C G T A G T C C G A T A C G T A C T G A G T C A G C T A C T G A C G T A G T C G T A C A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:KATCTTGCTGTCC-
------GCTGTCAA
 A C T G C G T A A C G T A G T C C G A T A C G T A C T G A G T C A G C T A C T G A C G T A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:KATCTTGCTGTCC--
TCNCCTGCTGNGNNN
 A C T G C G T A A C G T A G T C C G A T A C G T A C T G A G T C A G C T A C T G A C G T A G T C G T A C A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:KATCTTGCTGTCC
CCCCCTGCTGTG-
 A C T G C G T A A C G T A G T C C G A T A C G T A C T G A G T C A G C T A C T G A C G T A G T C G T A C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.60
Offset:6
Orientation:forward strand
Alignment:KATCTTGCTGTCC
------GCTGTG-
 A C T G C G T A A C G T A G T C C G A T A C G T A C T G A G T C A G C T A C T G A C G T A G T C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:KATCTTGCTGTCC
---CCTGCTGAGH
 A C T G C G T A A C G T A G T C C G A T A C G T A C T G A G T C A G C T A C T G A C G T A G T C G T A C
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:KATCTTGCTGTCC
-AATTTGCTGAC-
 A C T G C G T A A C G T A G T C C G A T A C G T A C T G A G T C A G C T A C T G A C G T A G T C G T A C
A C G T C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:KATCTTGCTGTCC-
------CCTGTCAA
 A C T G C G T A A C G T A G T C C G A T A C G T A C T G A G T C A G C T A C T G A C G T A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:KATCTTGCTGTCC
--ACTTCCTGTT-
 A C T G C G T A A C G T A G T C C G A T A C G T A C T G A G T C A G C T A C T G A C G T A G T C G T A C
A C G T A C G T T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T