Information for 1-TCAATTGGCCTTC (Motif 4)

A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A T G C A G T C A C G T C G A T G T A C
Reverse Opposite:
A C T G C G T A C G T A C T A G A T C G A G T C A G T C C G T A C G T A A C G T A C G T A C T G C G T A
p-value:1e-11
log p-value:-2.718e+01
Information Content per bp:1.935
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 15.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCAATTGGCCTTC
CCGATTGGCT---
 A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A T G C A G T C A C G T C G A T G T A C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TCAATTGGCCTTC
AAATTCAAGTGGNTTN-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A T G C A G T C A C G T C G A T G T A C
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TCAATTGGCCTTC
AANTTCAAGTGGCTTN-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A T G C A G T C A C G T C G A T G T A C
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TCAATTGGCCTTC
NANTTTCAAGTGGTTAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A T G C A G T C A C G T C G A T G T A C
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TCAATTGGCCTTC
AATTTCAAGTGGCTTN-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A T G C A G T C A C G T C G A T G T A C
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T

MSX2/MA0708.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCAATTGGCCTTC
NTAATTGG-----
 A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A T G C A G T C A C G T C G A T G T A C
A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

PH0107.1_Msx2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCAATTGGCCTTC
ANCGCTAATTGGTCTNN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A T G C A G T C A C G T C G A T G T A C
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCAATTGGCCTTC
NTCAAGTGGN----
 A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A T G C A G T C A C G T C G A T G T A C
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

PH0108.1_Msx3/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TCAATTGGCCTTC
NNNTTAATTGGTTTTN
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A T G C A G T C A C G T C G A T G T A C
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

PH0089.1_Isx/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCAATTGGCCTTC
ACNNCTAATTAGNNNN-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A T G C A G T C A C G T C G A T G T A C
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T A C G T