Information for 3-TGGATGTATAGCC (Motif 16)

A C G T A C T G A C T G C G T A A C G T A C T G A C G T C T G A A C G T C G T A A C T G A T G C A G T C
Reverse Opposite:
A C T G A T C G A G T C A C G T C G T A A G C T C G T A G T A C C G T A A C G T A G T C A G T C C G T A
p-value:1e-8
log p-value:-2.072e+01
Information Content per bp:1.940
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.2 +/- 18.8bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGGATGTATAGCC
-TGATTTATGGCC
 A C G T A C T G A C T G C G T A A C G T A C T G A C G T C T G A A C G T C G T A A C T G A T G C A G T C
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGGATGTATAGCC
NTGATTTATGGCC
 A C G T A C T G A C T G C G T A A C G T A C T G A C G T C T G A A C G T C G T A A C T G A T G C A G T C
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGGATGTATAGCC
-TGATTTATGGCC
 A C G T A C T G A C T G C G T A A C G T A C T G A C G T C T G A A C G T C G T A A C T G A T G C A G T C
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PB0163.1_Six6_2/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGGATGTATAGCC-
ANNNGGATATATCCNNN
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A C G T C T G A A C G T C G T A A C T G A T G C A G T C A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGGATGTATAGCC
-TGATTTATGGC-
 A C G T A C T G A C T G C G T A A C G T A C T G A C G T C T G A A C G T C G T A A C T G A T G C A G T C
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TGGATGTATAGCC
---ATGMATATDC
 A C G T A C T G A C T G C G T A A C G T A C T G A C G T C T G A A C G T C G T A A C T G A T G C A G T C
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

SMAD3/MA0795.1/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TGGATGTATAGCC-
----TGTCTAGACG
 A C G T A C T G A C T G C G T A A C G T A C T G A C G T C T G A A C G T C G T A A C T G A T G C A G T C A C G T
A C G T A C G T A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------TGGATGTATAGCC
NNNNNATTGATGNGTGN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A C G T C T G A A C G T C G T A A C T G A T G C A G T C
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A A C G T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGGATGTATAGCC
TCTATTTTTAGA-
 A C G T A C T G A C T G C G T A A C G T A C T G A C G T C T G A A C G T C G T A A C T G A T G C A G T C
C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGGATGTATAGCC
TCTATTTATAGN-
 A C G T A C T G A C T G C G T A A C G T A C T G A C G T C T G A A C G T C G T A A C T G A T G C A G T C
C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T A C G T