Information for 7-RGAWATCAKRCWCTRC (Motif 9)

C T G A A C T G C G T A C G T A C G T A C G A T A G T C G T C A A C G T C T G A A G T C C G A T A T G C A C G T C T A G A G T C
Reverse Opposite:
A C T G A G T C C G T A A T C G C G T A A C T G A G C T G T C A A C G T A C T G C G T A A C G T C G A T A C G T A G T C A G C T
p-value:1e-10
log p-value:-2.441e+01
Information Content per bp:1.834
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets37.3 +/- 27.2bp
Average Position of motif in Background67.4 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----RGAWATCAKRCWCTRC
AAGGCGAAATCATCGCA---
 A C G T A C G T A C G T A C G T C T G A A C T G C G T A C G T A C G T A C G A T A G T C G T C A A C G T C T G A A G T C C G A T A T G C A C G T C T A G A G T C
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A A C G T A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----RGAWATCAKRCWCTRC
GACAGAGATATCAGTGT----
 A C G T A C G T A C G T A C G T A C G T C T G A A C T G C G T A C G T A C G T A C G A T A G T C G T C A A C G T C T G A A G T C C G A T A T G C A C G T C T A G A G T C
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:3
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---RGAWATCAKRCWCTRC-
NNNGGGHAGCAHRTGCTRCC
 A C G T A C G T A C G T C T G A A C T G C G T A C G T A C G T A C G A T A G T C G T C A A C G T C T G A A G T C C G A T A T G C A C G T C T A G A G T C A C G T
A T G C A G T C G C A T C T A G A C T G C T A G G A C T C G T A C T A G A G T C T G C A G C A T C T G A A C G T T C A G A G T C A C G T C T A G A G T C A G T C

PB0059.1_Six6_1/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----RGAWATCAKRCWCTRC
AATAGGGTATCATATAT---
 A C G T A C G T A C G T A C G T C T G A A C T G C G T A C G T A C G T A C G A T A G T C G T C A A C G T C T G A A G T C C G A T A T G C A C G T C T A G A G T C
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T A C G T A C G T A C G T

PH0166.1_Six6_2/Jaspar

Match Rank:5
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----RGAWATCAKRCWCTRC
AATAGGGTATCAATATT---
 A C G T A C G T A C G T A C G T C T G A A C T G C G T A C G T A C G T A C G A T A G T C G T C A A C G T C T G A A G T C C G A T A T G C A C G T C T A G A G T C
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T A C G T A C G T A C G T

PH0161.1_Six1/Jaspar

Match Rank:6
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----RGAWATCAKRCWCTRC
GATGGGGTATCATTTTT---
 A C G T A C G T A C G T A C G T C T G A A C T G C G T A C G T A C G T A C G A T A G T C G T C A A C G T C T G A A G T C C G A T A T G C A C G T C T A G A G T C
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.50
Offset:1
Orientation:forward strand
Alignment:RGAWATCAKRCWCTRC
-CAAATCACTG-----
 C T G A A C T G C G T A C G T A C G T A C G A T A G T C G T C A A C G T C T G A A G T C C G A T A T G C A C G T C T A G A G T C
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--RGAWATCAKRCWCTRC
AAGGATATNTN-------
 A C G T A C G T C T G A A C T G C G T A C G T A C G T A C G A T A G T C G T C A A C G T C T G A A G T C C G A T A T G C A C G T C T A G A G T C
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----RGAWATCAKRCWCTRC
GGCCATAAATCAC-------
 A C G T A C G T A C G T A C G T C T G A A C T G C G T A C G T A C G T A C G A T A G T C G T C A A C G T C T G A A G T C C G A T A T G C A C G T C T A G A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:10
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----RGAWATCAKRCWCTRC
AATAGGGTATCAATTAT---
 A C G T A C G T A C G T A C G T C T G A A C T G C G T A C G T A C G T A C G A T A G T C G T C A A C G T C T G A A G T C C G A T A T G C A C G T C T A G A G T C
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T A C G T A C G T A C G T