Information for 4-GCTCATTGVATTTGTG (Motif 6)

C T A G A G T C A C G T A T G C C G T A A C G T C A G T A C T G T C G A C G T A C G A T A C G T A C G T T A C G C A G T A T C G
Reverse Opposite:
T A G C G C T A A T G C G T C A C G T A G C T A C G A T A G C T G T A C G C T A G T C A C G A T T A C G G T C A C T A G A G T C
p-value:1e-11
log p-value:-2.671e+01
Information Content per bp:1.690
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif44.9
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets57.4 +/- 20.2bp
Average Position of motif in Background41.0 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0005.1_Bbx_1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCTCATTGVATTTGTG
NANTTCATTGAATTA---
 A C G T A C G T C T A G A G T C A C G T A T G C C G T A A C G T C A G T A C T G T C G A C G T A C G A T A C G T A C G T T A C G C A G T A T C G
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCTCATTGVATTTGTG
NNNTATTGAATTGNNN
 C T A G A G T C A C G T A T G C C G T A A C G T C A G T A C T G T C G A C G T A C G A T A C G T A C G T T A C G C A G T A T C G
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

DUX4/MA0468.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCTCATTGVATTTGTG
--TGATTAAATTA---
 C T A G A G T C A C G T A T G C C G T A A C G T C A G T A C T G T C G A C G T A C G A T A C G T A C G T T A C G C A G T A T C G
A C G T A C G T C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:4
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:GCTCATTGVATTTGTG
--------AATTAGTG
 C T A G A G T C A C G T A T G C C G T A A C G T C A G T A C T G T C G A C G T A C G A T A C G T A C G T T A C G C A G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCTCATTGVATTTGTG
-YTAATYNRATTA---
 C T A G A G T C A C G T A T G C C G T A A C G T C A G T A C T G T C G A C G T A C G A T A C G T A C G T T A C G C A G T A T C G
A C G T G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A A C G T A C G T A C G T

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCTCATTGVATTTGTG
NWTGATTRGRTTAWN-
 C T A G A G T C A C G T A T G C C G T A A C G T C A G T A C T G T C G A C G T A C G A T A C G T A C G T T A C G C A G T A T C G
C G T A G C A T C G A T C T A G C G T A A C G T A C G T C T G A T C A G C T A G A C G T A C G T G C T A C G T A G T A C A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GCTCATTGVATTTGTG
-NTTATTGATTTTTT-
 C T A G A G T C A C G T A T G C C G T A A C G T C A G T A C T G T C G A C G T A C G A T A C G T A C G T T A C G C A G T A T C G
A C G T C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCTCATTGVATTTGTG
--TAATTAAATTA---
 C T A G A G T C A C G T A T G C C G T A A C G T C A G T A C T G T C G A C G T A C G A T A C G T A C G T T A C G C A G T A T C G
A C G T A C G T G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A A C G T A C G T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCTCATTGVATTTGTG
--TAATTAAATTA---
 C T A G A G T C A C G T A T G C C G T A A C G T C A G T A C T G T C G A C G T A C G A T A C G T A C G T T A C G C A G T A T C G
A C G T A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCTCATTGVATTTGTG
--NNTGTGGATTSS--
 C T A G A G T C A C G T A T G C C G T A A C G T C A G T A C T G T C G A C G T A C G A T A C G T A C G T T A C G C A G T A T C G
A C G T A C G T C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T A C G T