Information for 7-CCAGGATAAS (Motif 17)

G T A C G T A C G T C A C A T G A C T G C T G A A G C T C G T A G T C A T A G C
Reverse Opposite:
A T C G C A G T G C A T C T G A A G C T T G A C G T A C A C G T A C T G A C T G
p-value:1e-7
log p-value:-1.807e+01
Information Content per bp:1.751
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif5.31%
Number of Background Sequences with motif506.6
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets45.9 +/- 26.1bp
Average Position of motif in Background49.6 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGATAAS
ANCAGGATGT-
 A C G T G T A C G T A C G T C A C A T G A C T G C T G A A G C T C G T A G T C A T A G C
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCAGGATAAS-
TTGCCATGGCAACN
 A C G T A C G T A C G T G T A C G T A C G T C A C A T G A C T G C T G A A G C T C G T A G T C A T A G C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCAGGATAAS-
TTGCCATGGCAACC
 A C G T A C G T A C G T G T A C G T A C G T C A C A T G A C T G C T G A A G C T C G T A G T C A T A G C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCAGGATAAS-
-NBWGATAAGR
 G T A C G T A C G T C A C A T G A C T G C T G A A G C T C G T A G T C A T A G C A C G T
A C G T T A C G A T G C G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

GATA5/MA0766.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCAGGATAAS-
---AGATAAGA
 G T A C G T A C G T C A C A T G A C T G C T G A A G C T C G T A G T C A T A G C A C G T
A C G T A C G T A C G T G C T A A C T G C T G A A C G T G C T A C T G A T A C G T C G A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCAGGATAAS-
---GGATTAGC
 G T A C G T A C G T C A C A T G A C T G C T G A A G C T C G T A G T C A T A G C A C G T
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PB0185.1_Tcf1_2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCAGGATAAS-
TTGCCCGGATTAGG
 A C G T A C G T A C G T G T A C G T A C G T C A C A T G A C T G C T G A A G C T C G T A G T C A T A G C A C G T
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

RFX4/MA0799.1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCAGGATAAS-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C G T C A C A T G A C T G C T G A A G C T C G T A G T C A T A G C A C G T
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCAGGATAAS
--NGGATTAN
 G T A C G T A C G T C A C A T G A C T G C T G A A G C T C G T A G T C A T A G C
A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCAGGATAAS
GTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T G T A C G T A C G T C A C A T G A C T G C T G A A G C T C G T A G T C A T A G C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C