Information for 3-CCTMATRGAA (Motif 13)

G T A C A G T C A C G T G T A C C T G A C G A T C T A G A C T G C G T A T G C A
Reverse Opposite:
A C G T C G A T A G T C A G T C G C T A A G C T A C T G C G T A A C T G A C T G
p-value:1e-9
log p-value:-2.265e+01
Information Content per bp:1.761
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif5.87%
Number of Background Sequences with motif476.7
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets49.4 +/- 22.6bp
Average Position of motif in Background48.3 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCTMATRGAA
-CTAATKGV-
 G T A C A G T C A C G T G T A C C T G A C G A T C T A G A C T G C G T A T G C A
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCTMATRGAA-
GCCTCAGGGCAT
 A C G T G T A C A G T C A C G T G T A C C T G A C G A T C T A G A C T G C G T A T G C A A C G T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCTMATRGAA
CCYMATAAAA
 G T A C A G T C A C G T G T A C C T G A C G A T C T A G A C T G C G T A T G C A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCTMATRGAA-
SCCTSAGGSCAW
 A C G T G T A C A G T C A C G T G T A C C T G A C G A T C T A G A C T G C G T A T G C A A C G T
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

NFATC1/MA0624.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCTMATRGAA---
---NNTGGAAANN
 G T A C A G T C A C G T G T A C C T G A C G A T C T A G A C T G C G T A T G C A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTMATRGAA--
-TTCTTGGAAAN
 G T A C A G T C A C G T G T A C C T G A C G A T C T A G A C T G C G T A T G C A A C G T A C G T
A C G T A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCTMATRGAA---
---AATGGAAAAT
 G T A C A G T C A C G T G T A C C T G A C G A T C T A G A C T G C G T A T G C A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

NFATC3/MA0625.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCTMATRGAA---
---AATGGAAAAT
 G T A C A G T C A C G T G T A C C T G A C G A T C T A G A C T G C G T A T G C A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T

PH0068.1_Hoxc13/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCTMATRGAA---
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T G T A C A G T C A C G T G T A C C T G A C G A T C T A G A C T G C G T A T G C A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCTMATRGAA---
---NATGGAAAAN
 G T A C A G T C A C G T G T A C C T G A C G A T C T A G A C T G C G T A T G C A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T