Information for 4-AGGCAAGTTCCAA (Motif 12)

C G T A A C T G A C T G A G T C C G T A C G T A C T A G A C G T A C G T A G T C A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C T G C G T A T G C A A G T C A C G T A C G T A C T G G T A C A G T C A C G T
p-value:1e-9
log p-value:-2.281e+01
Information Content per bp:1.942
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.5 +/- 12.4bp
Average Position of motif in Background70.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AGGCAAGTTCCAA
AAGGCAAGTGT---
 A C G T C G T A A C T G A C T G A G T C C G T A C G T A C T A G A C G T A C G T A G T C A G T C C G T A C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGGCAAGTTCCAA
-GGGAATTTCC--
 C G T A A C T G A C T G A G T C C G T A C G T A C T A G A C G T A C G T A G T C A G T C C G T A C G T A
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

HES7/MA0822.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGCAAGTTCCAA
TGGCACGTGCCA-
 C G T A A C T G A C T G A G T C C G T A C G T A C T A G A C G T A C G T A G T C A G T C C G T A C G T A
G A C T T C A G T C A G G A T C T C G A A G T C C T A G G A C T T C A G G A T C A G T C C T G A A C G T

HES5/MA0821.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGCAAGTTCCAA
CGGCACGTGCCA-
 C G T A A C T G A C T G A G T C C G T A C G T A C T A G A C G T A C G T A G T C A G T C C G T A C G T A
G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGGCAAGTTCCAA-
GGGGTCAAAGTCCAAT
 A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A C T A G A C G T A C G T A G T C A G T C C G T A C G T A A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGCAAGTTCCAA---
GGCAAAAGTCCAATAA
 C G T A A C T G A C T G A G T C C G T A C G T A C T A G A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGGCAAGTTCCAA---
TATTCAAGGTCATGCGA
 A C G T C G T A A C T G A C T G A G T C C G T A C G T A C T A G A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

RELA/MA0107.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGGCAAGTTCCAA
-GGGAATTTCC--
 C G T A A C T G A C T G A G T C C G T A C G T A C T A G A C G T A C G T A G T C A G T C C G T A C G T A
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGGCAAGTTCCAA
-GGGAAATCCCCN
 C G T A A C T G A C T G A G T C C G T A C G T A C T A G A C G T A C G T A G T C A G T C C G T A C G T A
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGGCAAGTTCCAA-
----ATTTTCCATT
 C G T A A C T G A C T G A G T C C G T A C G T A C T A G A C G T A C G T A G T C A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T