Information for 3-TATAGACACT (Motif 14)

A G C T G T C A C G A T C G T A A C T G G T C A A G T C C G T A A G T C C G A T
Reverse Opposite:
C G T A A C T G C G A T A C T G A C G T A G T C G C A T C G T A A C G T C T G A
p-value:1e-9
log p-value:-2.187e+01
Information Content per bp:1.853
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.65%
Number of Background Sequences with motif70.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets47.3 +/- 27.4bp
Average Position of motif in Background52.7 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TATAGACACT
CGTCTAGACA--
 A C G T A C G T A G C T G T C A C G A T C G T A A C T G G T C A A G T C C G T A A G T C C G A T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TATAGACACT
WWATRTAAACAN-
 A C G T A C G T A C G T A G C T G T C A C G A T C G T A A C T G G T C A A G T C C G T A A G T C C G A T
G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TATAGACACT-
AATAAACAATN
 A G C T G T C A C G A T C G T A A C T G G T C A A G T C C G T A A G T C C G A T A C G T
G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

FOXB1/MA0845.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TATAGACACT
ATATTTACATA
 A C G T A G C T G T C A C G A T C G T A A C T G G T C A A G T C C G T A A G T C C G A T
C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TATAGACACT---
---MRSCACTYAA
 A G C T G T C A C G A T C G T A A C T G G T C A A G T C C G T A A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TATAGACACT
--TTGACAG-
 A G C T G T C A C G A T C G T A A C T G G T C A A G T C C G T A A G T C C G A T
A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TATAGACACT---
---AASCACTCAA
 A G C T G T C A C G A T C G T A A C T G G T C A A G T C C G T A A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TATAGACACT
WWTRTAAACAVG
 A C G T A C G T A G C T G T C A C G A T C G T A A C T G G T C A A G T C C G T A A G T C C G A T
C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TATAGACACT--
BSNTGTTTACWYWGN
 A C G T A C G T A C G T A G C T G T C A C G A T C G T A A C T G G T C A A G T C C G T A A G T C C G A T A C G T A C G T
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TATAGACACT----
----RSCACTYRAG
 A G C T G T C A C G A T C G T A A C T G G T C A A G T C C G T A A G T C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G