Information for 3-GAAAATCATAATA (Motif 4)

A C T G C G T A C G T A C G T A C G T A C G A T A G T C C G T A A C G T C G T A G T C A A C G T C T G A
Reverse Opposite:
A G C T C G T A A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A G T C
p-value:1e-12
log p-value:-2.777e+01
Information Content per bp:1.948
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 26.2bp
Average Position of motif in Background70.4 +/- 9.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0064.1_Sox14_1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAAAATCATAATA---
GCTAATTATAATTATC
 A C T G C G T A C G T A C G T A C G T A C G A T A G T C C G T A A C G T C G T A G T C A A C G T C T G A A C G T A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0079.1_Sry_1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAAAATCATAATA---
TATAATTATAATATTC
 A C T G C G T A C G T A C G T A C G T A C G A T A G T C C G T A A C G T C G T A G T C A A C G T C T G A A C G T A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0174.1_Sox30_2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAAAATCATAATA---
TAAGATTATAATACGG
 A C T G C G T A C G T A C G T A C G T A C G A T A G T C C G T A A C G T C G T A G T C A A C G T C T G A A C G T A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

PB0069.1_Sox21_1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAAAATCATAATA---
NNTAATTATAATNANN
 A C T G C G T A C G T A C G T A C G T A C G A T A G T C C G T A A C G T C G T A G T C A A C G T C T G A A C G T A C G T A C G T
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

PH0037.1_Hdx/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GAAAATCATAATA
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G A T A G T C C G T A A C G T C G T A G T C A A C G T C T G A
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PB0136.1_IRC900814_2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAAAATCATAATA
ATGGAAAGTCGTAAAA
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G A T A G T C C G T A A C G T C G T A G T C A A C G T C T G A
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

PB0123.1_Foxl1_2/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAAAATCATAATA-----
--ATATCAAAACAAAACA
 A C T G C G T A C G T A C G T A C G T A C G A T A G T C C G T A A C G T C G T A G T C A A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0176.1_Sox5_2/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAAAATCATAATA-----
---TATCATAATTAAGGA
 A C T G C G T A C G T A C G T A C G T A C G A T A G T C C G T A A C G T C G T A G T C A A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

PB0122.1_Foxk1_2/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAAAATCATAATA---
-CAAACAACAACACCT
 A C T G C G T A C G T A C G T A C G T A C G A T A G T C C G T A A C G T C G T A G T C A A C G T C T G A A C G T A C G T A C G T
A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

IRF7/MA0772.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAAAATCATAATA
ACGAAAGCGAAAGT-
 A C G T A C G T A C T G C G T A C G T A C G T A C G T A C G A T A G T C C G T A A C G T C G T A G T C A A C G T C T G A
G T C A T G A C A C T G T G C A C G T A G T C A T C A G G A T C C T A G G T C A T C G A G C T A T C A G G C A T A C G T