p-value: | 1e-6 |
log p-value: | -1.544e+01 |
Information Content per bp: | 1.938 |
Number of Target Sequences with motif | 5.0 |
Percentage of Target Sequences with motif | 1.00% |
Number of Background Sequences with motif | 13.0 |
Percentage of Background Sequences with motif | 0.03% |
Average Position of motif in Targets | 30.4 +/- 13.6bp |
Average Position of motif in Background | 44.5 +/- 24.8bp |
Strand Bias (log2 ratio + to - strand density) | 0.6 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
SD0002.1_at_AC_acceptor/Jaspar
Match Rank: | 1 |
Score: | 0.66 |
Offset: | -3 |
Orientation: | reverse strand |
Alignment: | ---GTTGCCTTAG NNACTTGCCTT-- |
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Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer
Match Rank: | 2 |
Score: | 0.65 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -GTTGCCTTAG--- NGTTGCCATGGCAA |
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X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer
Match Rank: | 3 |
Score: | 0.64 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -GTTGCCTTAG--- GGTTGCCATGGCAA |
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RFX5/MA0510.2/Jaspar
Match Rank: | 4 |
Score: | 0.63 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -GTTGCCTTAG----- CGTTGCCATGGCAACG |
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Rfx1/MA0509.1/Jaspar
Match Rank: | 5 |
Score: | 0.63 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | GTTGCCTTAG---- GTTGCCATGGNAAC |
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Nr2e1/MA0676.1/Jaspar
Match Rank: | 6 |
Score: | 0.62 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | GTTGCCTTAG -TTGACTTTT |
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Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer
Match Rank: | 7 |
Score: | 0.61 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | GTTGCCTTAG----- GTTGCCATGGCAACM |
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RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer
Match Rank: | 8 |
Score: | 0.61 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --GTTGCCTTAG---- CGGTTGCCATGGCAAC |
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RFX3/MA0798.1/Jaspar
Match Rank: | 9 |
Score: | 0.60 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -GTTGCCTTAG----- CGTTGCCATGGCAACG |
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RFX2/MA0600.2/Jaspar
Match Rank: | 10 |
Score: | 0.60 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -GTTGCCTTAG----- CGTTGCCATGGCAACG |
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