Information for 3-AAAAMACTCAAGC (Motif 5)

C T G A T C G A T C G A C T G A G T A C T G C A A G T C G A C T A G T C T C G A C T G A A C T G A G T C
Reverse Opposite:
T C A G A G T C A G C T A G C T T A C G C T G A C T A G A C G T A C T G A G C T A G C T A G C T G A C T
p-value:1e-11
log p-value:-2.733e+01
Information Content per bp:1.670
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.49%
Number of Background Sequences with motif58.5
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets58.5 +/- 22.9bp
Average Position of motif in Background54.1 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AAAAMACTCAAGC
-AGCCACTCAAG-
 C T G A T C G A T C G A C T G A G T A C T G C A A G T C G A C T A G T C T C G A C T G A A C T G A G T C
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AAAAMACTCAAGC
-AAGCACTTAA--
 C T G A T C G A T C G A C T G A G T A C T G C A A G T C G A C T A G T C T C G A C T G A A C T G A G T C
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAAAMACTCAAGC
--RSCACTYRAG-
 C T G A T C G A T C G A C T G A G T A C T G C A A G T C G A C T A G T C T C G A C T G A A C T G A G T C
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAAAMACTCAAGC
-MRSCACTYAA--
 C T G A T C G A T C G A C T G A G T A C T G C A A G T C G A C T A G T C T C G A C T G A A C T G A G T C
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAAAMACTCAAGC
-AASCACTCAA--
 C T G A T C G A T C G A C T G A G T A C T G C A A G T C G A C T A G T C T C G A C T G A A C T G A G T C
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAAAMACTCAAGC
--AAAAGTCAA--
 C T G A T C G A T C G A C T G A G T A C T G C A A G T C G A C T A G T C T C G A C T G A A C T G A G T C
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AAAAMACTCAAGC
-AGAAACGAAAGT
 C T G A T C G A T C G A C T G A G T A C T G C A A G T C G A C T A G T C T C G A C T G A A C T G A G T C
A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAAAMACTCAAGC
--NSCACTYVAV-
 C T G A T C G A T C G A C T G A G T A C T G C A A G T C G A C T A G T C T C G A C T G A A C T G A G T C
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAAAMACTCAAGC
GAAAAAATTGCAAGG
 A C G T A C G T C T G A T C G A T C G A C T G A G T A C T G C A A G T C G A C T A G T C T C G A C T G A A C T G A G T C
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

SPI1/MA0080.4/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAAAMACTCAAGC-
AAAAAGCGGAAGTA
 C T G A T C G A T C G A C T G A G T A C T G C A A G T C G A C T A G T C T C G A C T G A A C T G A G T C A C G T
T C G A C T G A C G T A C G T A C G T A T A C G T G A C C T A G A T C G G T C A C G T A A T C G G A C T C G T A