Information for 9-GGAGTGATCA (Motif 26)

A T C G A C T G C T G A A C T G C G A T A C T G C T G A A C G T A G T C C G T A
Reverse Opposite:
A C G T C T A G C G T A A G C T A G T C G C T A G T A C A G C T A G T C A T G C
p-value:1e-3
log p-value:-7.276e+00
Information Content per bp:1.815
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif17.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets54.5 +/- 24.4bp
Average Position of motif in Background62.3 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)2.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0016.1_Cux1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGAGTGATCA-----
ACCGGTTGATCACCTGA
 A C G T A C G T A T C G A C T G C T G A A C T G C G A T A C T G C T G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGAGTGATCA-----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A T C G A C T G C T G A A C T G C G A T A C T G C T G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

RHOXF1/MA0719.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GGAGTGATCA-
---NGGATTAN
 A T C G A C T G C T G A A C T G C G A T A C T G C T G A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

PH0017.1_Cux1_2/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGAGTGATCA------
-TAGTGATCATCATTA
 A T C G A C T G C T G A A C T G C G A T A C T G C T G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

CUX1/MA0754.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGAGTGATCA
NTATCGATTA
 A T C G A C T G C T G A A C T G C G A T A C T G C T G A A C G T A G T C C G T A
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GGAGTGATCA
--AGRGGTCA
 A T C G A C T G C T G A A C T G C G A T A C T G C T G A A C G T A G T C C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGAGTGATCA
ATGGGGTGAT--
 A C G T A C G T A T C G A C T G C T G A A C T G C G A T A C T G C T G A A C G T A G T C C G T A
T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T A C G T

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGAGTGATCA-----
TGAGGGGGATTAACTAT
 A C G T A C G T A T C G A C T G C T G A A C T G C G A T A C T G C T G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGAGTGATCA
NTATYGATCH
 A T C G A C T G C T G A A C T G C G A T A C T G C T G A A C G T A G T C C G T A
C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

SREBF2/MA0596.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGAGTGATCA
ATGGGGTGAT--
 A C G T A C G T A T C G A C T G C T G A A C T G C G A T A C T G C T G A A C G T A G T C C G T A
T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T A C G T