Information for 20-CACGTGYRCAKGR (Motif 39)

A G T C C G T A A G T C A C T G A C G T A C T G A G C T C T G A A G T C C G T A A C G T A C T G C T G A
Reverse Opposite:
A G C T A G T C G T C A A C G T A C T G A G C T C T G A A G T C C G T A A G T C C T A G A C G T C T A G
p-value:1e-5
log p-value:-1.342e+01
Information Content per bp:1.872
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.4 +/- 25.8bp
Average Position of motif in Background90.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CACGTGYRCAKGR
CACGTGBN-----
 A G T C C G T A A G T C A C T G A C G T A C T G A G C T C T G A A G T C C G T A A C G T A C T G C T G A
G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A A C G T A C G T A C G T A C G T A C G T

Id2/MA0617.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGYRCAKGR
TCACGTGC------
 A C G T A G T C C G T A A G T C A C T G A C G T A C T G A G C T C T G A A G T C C G T A A C G T A C T G C T G A
G A C T A G T C C G T A A G T C A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:3
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CACGTGYRCAKGR
GGCACGTGTC-----
 A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A G C T C T G A A G T C C G T A A C G T A C T G C T G A
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T A C G T A C G T A C G T A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:4
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CACGTGYRCAKGR
GCACGTGT------
 A C G T A G T C C G T A A G T C A C T G A C G T A C T G A G C T C T G A A G T C C G T A A C G T A C T G C T G A
A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T A C G T A C G T A C G T A C G T A C G T A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CACGTGYRCAKGR
GNCACGTG-------
 A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A G C T C T G A A G T C C G T A A C G T A C T G C T G A
C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CACGTGYRCAKGR
CACGTG-------
 A G T C C G T A A G T C A C T G A C G T A C T G A G C T C T G A A G T C C G T A A C G T A C T G C T G A
G T A C C T G A A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CACGTGYRCAKGR
GHCACGTG-------
 A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A G C T C T G A A G T C C G T A A C G T A C T G C T G A
C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0043.1_Max_1/Jaspar

Match Rank:8
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----CACGTGYRCAKGR
TGACCACGTGGTCGGG-
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A G C T C T G A A G T C C G T A A C G T A C T G C T G A
C A G T C A T G T G C A T A G C G T A C C T G A A G T C T C A G G A C T A C T G A T C G A C G T A T G C T C A G C A T G C A T G A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CACGTGYRCAKGR
NGKCACGTGM------
 A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A G C T C T G A A G T C C G T A A C G T A C T G C T G A
T C G A T C A G C A T G A G T C C G T A A G T C C T A G A C G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

MNT/MA0825.1/Jaspar

Match Rank:10
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CACGTGYRCAKGR
NGCACGTGNT-----
 A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A G C T C T G A A G T C C G T A A C G T A C T G C T G A
C T A G A C T G G T A C G T C A A G T C T C A G C G A T C A T G A T C G G A C T A C G T A C G T A C G T A C G T A C G T