Information for 9-CAGCAAGGGCCAG (Motif 22)

A G T C C G T A A C T G A T G C C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
G T A C A C G T A C T G A C T G A G T C A G T C A G T C C G A T A C G T A T C G A G T C C G A T A C T G
p-value:1e-9
log p-value:-2.193e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets30.8 +/- 23.3bp
Average Position of motif in Background66.7 +/- 10.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGCAAGGGCCAG
---CAAAGGTCAG
 A G T C C G T A A C T G A T G C C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAAGGGCCAG
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAGCAAGGGCCAG
CACAGCAGGGGG---
 A C G T A C G T A G T C C G T A A C T G A T G C C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

HES7/MA0822.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGCAAGGGCCAG
TGGCACGTGCCA-
 A G T C C G T A A C T G A T G C C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
G A C T T C A G T C A G G A T C T C G A A G T C C T A G G A C T T C A G G A T C A G T C C T G A A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAGCAAGGGCCAG
---CAAGGHCANV
 A G T C C G T A A C T G A T G C C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGCAAGGGCCAG
GGAGAAAGGTGCGA
 A C G T A G T C C G T A A C T G A T G C C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

HES5/MA0821.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CAGCAAGGGCCAG
CGGCACGTGCCA-
 A G T C C G T A A C T G A T G C C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAAGGGCCAG
DCTCAGCAGG------
 A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAAGGGCCAG
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAGCAAGGGCCAG
ACAGGAAGTG----
 A C G T A G T C C G T A A C T G A T G C C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G A C G T A C G T A C G T A C G T