Information for 2-CTGACCACAA (Motif 2)

G A T C G C A T C T A G T C G A A G T C A G T C C T G A A T G C C T G A T C G A
Reverse Opposite:
A G C T G A C T T A C G G A C T A C T G A C T G A G C T A G T C C G T A C T A G
p-value:1e-36
log p-value:-8.299e+01
Information Content per bp:1.727
Number of Target Sequences with motif156.0
Percentage of Target Sequences with motif21.88%
Number of Background Sequences with motif3196.0
Percentage of Background Sequences with motif7.04%
Average Position of motif in Targets48.9 +/- 26.1bp
Average Position of motif in Background51.0 +/- 36.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CTGACCACAA--
NWAACCACADNN
 G A T C G C A T C T A G T C G A A G T C A G T C C T G A A T G C C T G A T C G A A C G T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CTGACCACAA
NAAACCACAG
 G A T C G C A T C T A G T C G A A G T C A G T C C T G A A T G C C T G A T C G A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CTGACCACAA-
-AAACCACAGC
 G A T C G C A T C T A G T C G A A G T C A G T C C T G A A T G C C T G A T C G A A C G T
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CTGACCACAA--
-AAACCACAGAN
 G A T C G C A T C T A G T C G A A G T C A G T C C T G A A T G C C T G A T C G A A C G T A C G T
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CTGACCACAA
-TGACCYCT-
 G A T C G C A T C T A G T C G A A G T C A G T C C T G A A T G C C T G A T C G A
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:6
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CTGACCACAA-
-AAACCGCAAA
 G A T C G C A T C T A G T C G A A G T C A G T C C T G A A T G C C T G A T C G A A C G T
A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CTGACCACAA-
-AAACCACANN
 G A T C G C A T C T A G T C G A A G T C A G T C C T G A A T G C C T G A T C G A A C G T
A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX2/MA0511.2/Jaspar

Match Rank:8
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CTGACCACAA
-AAACCGCAA
 G A T C G C A T C T A G T C G A A G T C A G T C C T G A A T G C C T G A T C G A
A C G T G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CTGACCACAA
-TGACCTYA-
 G A T C G C A T C T A G T C G A A G T C A G T C C T G A A T G C C T G A T C G A
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:10
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----CTGACCACAA---
TGTCGTGACCCCTTAAT
 A C G T A C G T A C G T A C G T G A T C G C A T C T A G T C G A A G T C A G T C C T G A A T G C C T G A T C G A A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T