Information for 13-AGATGNTAATGCAGGA (Motif 19)

C G T A A C T G G T C A G A C T A C T G A C G T A C G T C G T A C T G A A C G T A C T G G T A C C G T A C T A G A T C G C G T A
Reverse Opposite:
A C G T A T G C A G T C A C G T A C T G A G T C C G T A A G C T A C G T T C G A C G T A A G T C C G T A A C G T G T A C A C G T
p-value:1e-9
log p-value:-2.213e+01
Information Content per bp:1.783
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.3 +/- 22.6bp
Average Position of motif in Background63.4 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGATGNTAATGCAGGA
AGGTGTTAAT------
 C G T A A C T G G T C A G A C T A C T G A C G T A C G T C G T A C T G A A C G T A C T G G T A C C G T A C T A G A T C G C G T A
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGATGNTAATGCAGGA
-TATGCWAATBAV---
 C G T A A C T G G T C A G A C T A C T G A C G T A C G T C G T A C T G A A C G T A C T G G T A C C G T A C T A G A T C G C G T A
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGATGNTAATGCAGGA
-WATGCAAATGAG---
 C G T A A C T G G T C A G A C T A C T G A C G T A C G T C G T A C T G A A C G T A C T G G T A C C G T A C T A G A T C G C G T A
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGATGNTAATGCAGGA
TTATGCAAATTA----
 C G T A A C T G G T C A G A C T A C T G A C G T A C G T C G T A C T G A A C G T A C T G G T A C C G T A C T A G A T C G C G T A
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T A C G T A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGATGNTAATGCAGGA
----GGGATTGCATNN
 C G T A A C T G G T C A G A C T A C T G A C G T A C G T C G T A C T G A A C G T A C T G G T A C C G T A C T A G A T C G C G T A
A C G T A C G T A C G T A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGATGNTAATGCAGGA
ATATGCAAATNNN---
 C G T A A C T G G T C A G A C T A C T G A C G T A C G T C G T A C T G A A C G T A C T G G T A C C G T A C T A G A T C G C G T A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGATGNTAATGCAGGA
TTATGCAAATTA----
 C G T A A C T G G T C A G A C T A C T G A C G T A C G T C G T A C T G A A C G T A C T G G T A C C G T A C T A G A T C G C G T A
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AGATGNTAATGCAGGA
AATATGCAAATT-----
 A C G T C G T A A C T G G T C A G A C T A C T G A C G T A C G T C G T A C T G A A C G T A C T G G T A C C G T A C T A G A T C G C G T A
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T A C G T A C G T A C G T A C G T

POU1F1/MA0784.1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AGATGNTAATGCAGGA
AATATGCAAATTAG---
 A C G T C G T A A C T G G T C A G A C T A C T G A C G T A C G T C G T A C T G A A C G T A C T G G T A C C G T A C T A G A T C G C G T A
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGATGNTAATGCAGGA
-TATGCAAAT------
 C G T A A C T G G T C A G A C T A C T G A C G T A C G T C G T A C T G A A C G T A C T G G T A C C G T A C T A G A T C G C G T A
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T