Information for 2-TGAAGKAGAA (Motif 4)

A C G T A C T G C G T A C G T A A T C G A C G T C G T A A C T G C G T A C T G A
Reverse Opposite:
A G C T A C G T A G T C A C G T T G C A A T G C A C G T A C G T A G T C G T C A
p-value:1e-6
log p-value:-1.435e+01
Information Content per bp:1.909
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif17.65%
Number of Background Sequences with motif422.7
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets75.7 +/- 16.3bp
Average Position of motif in Background49.9 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGAAGKAGAA
NGAAGC----
 A C G T A C T G C G T A C G T A A T C G A C G T C G T A A C T G C G T A C T G A
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGAAGKAGAA---
-GAAACTGAAACT
 A C G T A C T G C G T A C G T A A T C G A C G T C G T A A C T G C G T A C T G A A C G T A C G T A C G T
A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGAAGKAGAA---
-GAAAGTGAAAGT
 A C G T A C T G C G T A C G T A A T C G A C G T C G T A A C T G C G T A C T G A A C G T A C G T A C G T
A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:4
Score:0.58
Offset:-9
Orientation:forward strand
Alignment:---------TGAAGKAGAA-
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T C G T A A C T G C G T A C T G A A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGAAGKAGAA----
TTGACCGAGAATTCC
 A C G T A C G T A C T G C G T A C G T A A T C G A C G T C G T A A C T G C G T A C T G A A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

IRF1/MA0050.2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGAAGKAGAA-------
AAANNGAAAGTGAAAGTAAAN
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T C G T A A C T G C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TGAAGKAGAA---
-AAAGRGGAAGTG
 A C G T A C T G C G T A C G T A A T C G A C G T C G T A A C T G C G T A C T G A A C G T A C G T A C G T
A C G T C G T A C T G A C G T A C T A G T C G A C T A G A C T G C G T A C G T A T A C G A G C T A T C G

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGAAGKAGAA
NTCAAGTGG--
 A C G T A C G T A C T G C G T A C G T A A T C G A C G T C G T A A C T G C G T A C T G A
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGAAGKAGAA------
NNGATCTAGAACCTNNN
 A C G T A C G T A C T G C G T A C G T A A T C G A C G T C G T A A C T G C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

Atf1/MA0604.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGAAGKAGAA
ATGACGTA---
 A C G T A C G T A C T G C G T A C G T A A T C G A C G T C G T A A C T G C G T A C T G A
T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A A C G T A C G T A C G T