Information for 1-GTTGGGAGAGASCCAT (Motif 2)

T A C G A C G T G C A T C T A G C T A G T A C G C G T A A C T G C T G A A C T G G C T A A T C G T A G C T G A C C G T A A G C T
Reverse Opposite:
C T G A C G A T A C T G A T C G T A G C C G A T T A G C A G C T A G T C C G A T A T G C A G T C A G T C C G T A C G T A A G T C
p-value:1e-7
log p-value:-1.685e+01
Information Content per bp:1.622
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif14.71%
Number of Background Sequences with motif133.3
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets51.6 +/- 21.1bp
Average Position of motif in Background50.1 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL011.1_XCPE1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GTTGGGAGAGASCCAT
---GGGCGGGACC---
 T A C G A C G T G C A T C T A G C T A G T A C G C G T A A C T G C T G A A C T G G C T A A T C G T A G C T G A C C G T A A G C T
A C G T A C G T A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTTGGGAGAGASCCAT
---AGGTGNCAGACAG
 T A C G A C G T G C A T C T A G C T A G T A C G C G T A A C T G C T G A A C T G G C T A A T C G T A G C T G A C C G T A A G C T
A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GTTGGGAGAGASCCAT
--TGAGTGACAGSC--
 T A C G A C G T G C A T C T A G C T A G T A C G C G T A A C T G C T G A A C T G G C T A A T C G T A G C T G A C C G T A A G C T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTTGGGAGAGASCCAT
-CTGGCAGNCTGCCA-
 T A C G A C G T G C A T C T A G C T A G T A C G C G T A A C T G C T G A A C T G G C T A A T C G T A G C T G A C C G T A A G C T
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTTGGGAGAGASCCAT
TGCGGAGTGGGACTGG-
 A C G T T A C G A C G T G C A T C T A G C T A G T A C G C G T A A C T G C T G A A C T G G C T A A T C G T A G C T G A C C G T A A G C T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GTTGGGAGAGASCCAT
---AGGTGHCAGACA-
 T A C G A C G T G C A T C T A G C T A G T A C G C G T A A C T G C T G A A C T G G C T A A T C G T A G C T G A C C G T A A G C T
A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTTGGGAGAGASCCAT
-NTGATTGACAGN---
 T A C G A C G T G C A T C T A G C T A G T A C G C G T A A C T G C T G A A C T G G C T A A T C G T A G C T G A C C G T A A G C T
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GTTGGGAGAGASCCAT
---GGGCGGGAAGG--
 T A C G A C G T G C A T C T A G C T A G T A C G C G T A A C T G C T G A A C T G G C T A A T C G T A G C T G A C C G T A A G C T
A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTTGGGAGAGASCCAT
GTATTGGGTGGGTAATT-
 A C G T A C G T T A C G A C G T G C A T C T A G C T A G T A C G C G T A A C T G C T G A A C T G G C T A A T C G T A G C T G A C C G T A A G C T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTTGGGAGAGASCCAT
-BTGABTGACAGS---
 T A C G A C G T G C A T C T A G C T A G T A C G C G T A A C T G C T G A A C T G G C T A A T C G T A G C T G A C C G T A A G C T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T