Information for 6-TTCCCGGCTGATCCCG (Motif 7)

A C G T A C G T A G T C A T G C G T A C C T A G C T A G A T G C A C G T A C T G T C G A A C G T A G T C G T A C A T G C T C A G
Reverse Opposite:
A G T C T A C G A C T G A C T G G T C A A C G T A G T C G T C A A T C G A G T C G A T C C A T G A T C G T A C G G T C A T C G A
p-value:1e-11
log p-value:-2.734e+01
Information Content per bp:1.708
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif49.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets41.2 +/- 24.4bp
Average Position of motif in Background51.7 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTCCCGGCTGATCCCG
--CGTGGGTGGTCC--
 A C G T A C G T A G T C A T G C G T A C C T A G C T A G A T G C A C G T A C T G T C G A A C G T A G T C G T A C A T G C T C A G
A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.61
Offset:7
Orientation:forward strand
Alignment:TTCCCGGCTGATCCCG
-------ATAATCCC-
 A C G T A C G T A G T C A T G C G T A C C T A G C T A G A T G C A C G T A C T G T C G A A C G T A G T C G T A C A T G C T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TTCCCGGCTGATCCCG----
----NNNNTGACCCGGCGCG
 A C G T A C G T A G T C A T G C G T A C C T A G C T A G A T G C A C G T A C T G T C G A A C G T A G T C G T A C A T G C T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TTCCCGGCTGATCCCG
---CCTGCTGAGH---
 A C G T A C G T A G T C A T G C G T A C C T A G C T A G A T G C A C G T A C T G T C G A A C G T A G T C G T A C A T G C T C A G
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTCCCGGCTGATCCCG--
--GNNAGCTAATCCCCCN
 A C G T A C G T A G T C A T G C G T A C C T A G C T A G A T G C A C G T A C T G T C G A A C G T A G T C G T A C A T G C T C A G A C G T A C G T
A C G T A C G T A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:TTCCCGGCTGATCCCG-
-------CTGTTCCTGG
 A C G T A C G T A G T C A T G C G T A C C T A G C T A G A T G C A C G T A C T G T C G A A C G T A G T C G T A C A T G C T C A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

PH0015.1_Crx/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TTCCCGGCTGATCCCG----
----AGGCTAATCCCCAANG
 A C G T A C G T A G T C A T G C G T A C C T A G C T A G A T G C A C G T A C T G T C G A A C G T A G T C G T A C A T G C T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:TTCCCGGCTGATCCCG
------GCTAATCC--
 A C G T A C G T A G T C A T G C G T A C C T A G C T A G A T G C A C G T A C T G T C G A A C G T A G T C G T A C A T G C T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TTCCCGGCTGATCCCG
-----CNGTCCTCCC-
 A C G T A C G T A G T C A T G C G T A C C T A G C T A G A T G C A C G T A C T G T C G A A C G T A G T C G T A C A T G C T C A G
A C G T A C G T A C G T A C G T A C G T A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TTCCCGGCTGATCCCG
-----TKCTGTTCCA-
 A C G T A C G T A G T C A T G C G T A C C T A G C T A G A T G C A C G T A C T G T C G A A C G T A G T C G T A C A T G C T C A G
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A A C G T