Information for 23-CAGAAATAVACAHTCA (Motif 38)

A T G C C T G A A C T G C G T A G T C A C G T A A G C T C G T A T C G A C G T A G T A C C G T A G A C T C G A T T A G C C G T A
Reverse Opposite:
A C G T A T C G C G T A C G T A A C G T A C T G C G A T A C G T A C G T C T G A A C G T A C G T A C G T A G T C A G C T A T C G
p-value:1e-7
log p-value:-1.716e+01
Information Content per bp:1.791
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.8 +/- 15.4bp
Average Position of motif in Background69.8 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxd3/MA0041.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CAGAAATAVACAHTCA
---AAACAAACATTC-
 A T G C C T G A A C T G C G T A G T C A C G T A A G C T C G T A T C G A C G T A G T A C C G T A G A C T C G A T T A G C C G T A
A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAGAAATAVACAHTCA
---AAATAAACA----
 A T G C C T G A A C T G C G T A G T C A C G T A A G C T C G T A T C G A C G T A G T A C C G T A G A C T C G A T T A G C C G T A
A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T A C G T

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAGAAATAVACAHTCA
-GGAAANTGAAACTNA
 A T G C C T G A A C T G C G T A G T C A C G T A A G C T C G T A T C G A C G T A G T A C C G T A G A C T C G A T T A G C C G T A
A C G T T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGAAATAVACAHTCA
DCYAAAAATAGM------
 A C G T A C G T A T G C C T G A A C T G C G T A G T C A C G T A A G C T C G T A T C G A C G T A G T A C C G T A G A C T C G A T T A G C C G T A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CAGAAATAVACAHTCA
ATGCTAAAAATAGAA-----
 A C G T A C G T A C G T A C G T A T G C C T G A A C T G C G T A G T C A C G T A A G C T C G T A T C G A C G T A G T A C C G T A G A C T C G A T T A G C C G T A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CAGAAATAVACAHTCA
----AATAAACAATN-
 A T G C C T G A A C T G C G T A G T C A C G T A A G C T C G T A T C G A C G T A G T A C C G T A G A C T C G A T T A G C C G T A
A C G T A C G T A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAGAAATAVACAHTCA
KCCAAAAATAGC------
 A C G T A C G T A T G C C T G A A C T G C G T A G T C A C G T A A G C T C G T A T C G A C G T A G T A C C G T A G A C T C G A T T A G C C G T A
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGAAATAVACAHTCA
CCAAAAATAG-------
 A C G T A T G C C T G A A C T G C G T A G T C A C G T A A G C T C G T A T C G A C G T A G T A C C G T A G A C T C G A T T A G C C G T A
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CAGAAATAVACAHTCA
--GAAACTGAAACT--
 A T G C C T G A A C T G C G T A G T C A C G T A A G C T C G T A T C G A C G T A G T A C C G T A G A C T C G A T T A G C C G T A
A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T A C G T A C G T

Foxj3/MA0851.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAGAAATAVACAHTCA-
AAAAAGTAAACAAACAC
 A T G C C T G A A C T G C G T A G T C A C G T A A G C T C G T A T C G A C G T A G T A C C G T A G A C T C G A T T A G C C G T A A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C