Information for 1-GCTTAAGGCC (Motif 17)

A C T G A G T C C G A T A G C T T G C A C T G A T A C G A C T G A G T C A T G C
Reverse Opposite:
A T C G A C T G A G T C A T G C A G C T A C G T T C G A C G T A A C T G A G T C
p-value:1e-10
log p-value:-2.504e+01
Information Content per bp:1.855
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.53%
Number of Background Sequences with motif158.6
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets42.4 +/- 24.2bp
Average Position of motif in Background50.3 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAAGGCC
NGCCTNAGGCN
 A C G T A C T G A G T C C G A T A G C T T G C A C T G A T A C G A C T G A G T C A T G C
G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2A/MA0003.3/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAAGGCC
NGCCTGAGGCN
 A C G T A C T G A G T C C G A T A G C T T G C A C T G A T A C G A C T G A G T C A T G C
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCTTAAGGCC
AGCCTCAGGCA
 A C G T A C T G A G T C C G A T A G C T T G C A C T G A T A C G A C T G A G T C A T G C
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GCTTAAGGCC---
-----AGGCCTNG
 A C T G A G T C C G A T A G C T T G C A C T G A T A C G A C T G A G T C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCTTAAGGCC---
AAGTTCAAGGTCAGC
 A C G T A C G T A C T G A G T C C G A T A G C T T G C A C T G A T A C G A C T G A G T C A T G C A C G T A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCTTAAGGCC--
SCCTSAGGSCAW
 A C T G A G T C C G A T A G C T T G C A C T G A T A C G A C T G A G T C A T G C A C G T A C G T
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCTTAAGGCC--
GCCTCAGGGCAT
 A C T G A G T C C G A T A G C T T G C A C T G A T A C G A C T G A G T C A T G C A C G T A C G T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GCTTAAGGCC---
-----AGGCCTAG
 A C T G A G T C C G A T A G C T T G C A C T G A T A C G A C T G A G T C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCTTAAGGCC-
-NTCAAGGTCA
 A C T G A G T C C G A T A G C T T G C A C T G A T A C G A C T G A G T C A T G C A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCTTAAGGCC-
AGGTCAAGGTCA
 A C G T A C T G A G T C C G A T A G C T T G C A C T G A T A C G A C T G A G T C A T G C A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A