Information for 13-MKAAGAKSGATGG (Motif 11)

G T C A A C T G C T G A C G T A A C T G C G T A C A G T T A C G A C T G C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A G T C A T G C G T C A A C G T A G T C A C G T A G C T T G A C A C G T
p-value:1e-13
log p-value:-3.024e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 15.4bp
Average Position of motif in Background65.2 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:MKAAGAKSGATGG-
--ATGATKGATGRC
 G T C A A C T G C T G A C G T A A C T G C G T A C A G T T A C G A C T G C G T A A C G T A C T G A C T G A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:MKAAGAKSGATGG--
---TGATTRATGGCY
 G T C A A C T G C T G A C G T A A C T G C G T A C A G T T A C G A C T G C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:MKAAGAKSGATGG
---TGATTGATGA
 G T C A A C T G C T G A C G T A A C T G C G T A C A G T T A C G A C T G C G T A A C G T A C T G A C T G
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:MKAAGAKSGATGG-
---TGATTTATGGC
 G T C A A C T G C T G A C G T A A C T G C G T A C A G T T A C G A C T G C G T A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:MKAAGAKSGATGG----
NNNNNATTGATGNGTGN
 G T C A A C T G C T G A C G T A A C T G C G T A C A G T T A C G A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

LEF1/MA0768.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:MKAAGAKSGATGG---
-AAAGATCAAAGGGTT
 G T C A A C T G C T G A C G T A A C T G C G T A C A G T T A C G A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:MKAAGAKSGATGG
-TTTGATTGATGN
 G T C A A C T G C T G A C G T A A C T G C G T A C A G T T A C G A C T G C G T A A C G T A C T G A C T G
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Tcf7/MA0769.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:MKAAGAKSGATGG
-AAAGATCAAAGG
 G T C A A C T G C T G A C G T A A C T G C G T A C A G T T A C G A C T G C G T A A C G T A C T G A C T G
A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:MKAAGAKSGATGG
-CAAGATGGCGGC
 G T C A A C T G C T G A C G T A A C T G C G T A C A G T T A C G A C T G C G T A A C G T A C T G A C T G
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:MKAAGAKSGATGG--
---TGATTTATGGCC
 G T C A A C T G C T G A C G T A A C T G C G T A C A G T T A C G A C T G C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C