Information for 1-RTGATTAATBABT (Motif 1)

T C G A C G A T A T C G G T C A A C G T C G A T T G C A G T C A A G C T A C G T C G T A A T G C G C A T
Reverse Opposite:
C G T A T A C G G C A T T G C A T C G A C A G T A C G T G C T A T G C A A C G T A T G C C G T A A G C T
p-value:1e-147
log p-value:-3.403e+02
Information Content per bp:1.560
Number of Target Sequences with motif333.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif3206.4
Percentage of Background Sequences with motif7.04%
Average Position of motif in Targets51.9 +/- 19.8bp
Average Position of motif in Background50.4 +/- 35.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:RTGATTAATBABT
-TGATTGATGA--
 T C G A C G A T A T C G G T C A A C G T C G A T T G C A G T C A A G C T A C G T C G T A A T G C G C A T
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.91
Offset:1
Orientation:forward strand
Alignment:RTGATTAATBABT
-TGATTRATGGCY
 T C G A C G A T A T C G G T C A A C G T C G A T T G C A G T C A A G C T A C G T C G T A A T G C G C A T
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:RTGATTAATBABT
ATGATKGATGRC-
 T C G A C G A T A T C G G T C A A C G T C G A T T G C A G T C A A G C T A C G T C G T A A T G C G C A T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:RTGATTAATBABT
-TGATTTATGGC-
 T C G A C G A T A T C G G T C A A C G T C G A T T G C A G T C A A G C T A C G T C G T A A T G C G C A T
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:RTGATTAATBABT
-TGATTTATGGCC
 T C G A C G A T A T C G G T C A A C G T C G A T T G C A G T C A A G C T A C G T C G T A A T G C G C A T
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PH0150.1_Pou4f3/Jaspar

Match Rank:6
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---RTGATTAATBABT
GACNTCATTAATAANN
 A C G T A C G T A C G T T C G A C G A T A T C G G T C A A C G T C G A T T G C A G T C A A G C T A C G T C G T A A T G C G C A T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:7
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-RTGATTAATBABT--
AGTAATTAATTACTTC
 A C G T T C G A C G A T A T C G G T C A A C G T C G A T T G C A G T C A A G C T A C G T C G T A A T G C G C A T A C G T A C G T
T C G A T C A G G A C T G C T A C G T A C G A T A G C T C G T A C G T A C G A T A C G T C T G A A G T C A C G T G A C T A G T C

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:RTGATTAATBABT
NTGATTTATGGCC
 T C G A C G A T A T C G G T C A A C G T C G A T T G C A G T C A A G C T A C G T C G T A A T G C G C A T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-RTGATTAATBABT
TTTGATTGATGN--
 A C G T T C G A C G A T A T C G G T C A A C G T C G A T T G C A G T C A A G C T A C G T C G T A A T G C G C A T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:RTGATTAATBABT
-TGATTTATGGCC
 T C G A C G A T A T C G G T C A A C G T C G A T T G C A G T C A A G C T A C G T C G T A A T G C G C A T
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C