Information for 1-TTGTRMSSRRCAG (Motif 1)

A C G T A C G T A T C G A C G T C T G A G T A C A T G C A T C G C T A G C T G A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G C T A G T C A T G C A T C G A C T G A G C T C G T A A T G C C G T A C G T A
p-value:1e-9
log p-value:-2.078e+01
Information Content per bp:1.825
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.41%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.8 +/- 29.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:1
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TTGTRMSSRRCAG
CCATTGTTNY------
 A C G T A C G T A C G T A C G T A C G T A T C G A C G T C T G A G T A C A T G C A T C G C T A G C T G A A G T C C G T A A C T G
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TTGTRMSSRRCAG
CTTTGT---------
 A C G T A C G T A C G T A C G T A T C G A C G T C T G A G T A C A T G C A T C G C T A G C T G A A G T C C G T A A C T G
A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TTGTRMSSRRCAG
CCWTTGTYYB------
 A C G T A C G T A C G T A C G T A C G T A T C G A C G T C T G A G T A C A T G C A T C G C T A G C T G A A G T C C G T A A C T G
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:TTGTRMSSRRCAG-
--------CACAGN
 A C G T A C G T A T C G A C G T C T G A G T A C A T G C A T C G C T A G C T G A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TTGTRMSSRRCAG--
---TGAGTGACAGSC
 A C G T A C G T A T C G A C G T C T G A G T A C A T G C A T C G C T A G C T G A A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TTGTRMSSRRCAG
ATTGTT--------
 A C G T A C G T A C G T A T C G A C G T C T G A G T A C A T G C A T C G C T A G C T G A A G T C C G T A A C T G
G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TTGTRMSSRRCAG
CTCATTGTC--------
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T C T G A G T A C A T G C A T C G C T A G C T G A A G T C C G T A A C T G
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------TTGTRMSSRRCAG
NNNCCATTGTGTNAN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T C T G A G T A C A T G C A T C G C T A G C T G A A G T C C G T A A C T G
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TTGTRMSSRRCAG-
--NTGATTGACAGN
 A C G T A C G T A T C G A C G T C T G A G T A C A T G C A T C G C T A G C T G A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------TTGTRMSSRRCAG
AGGVNCCTTTGT---------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T C T G A G T A C A T G C A T C G C T A G C T G A A G T C C G T A A C T G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T