Information for 6-RCAGAGCCGAATGGCT (Motif 9)

C T A G A G T C T G C A A T C G C T G A C T A G A G T C G T A C A T C G C G T A T G C A A C G T T C A G A C T G T A G C A G C T
Reverse Opposite:
C T G A A C T G A G T C A G T C T G C A A C G T A C G T A T G C A C T G A C T G A G T C A G C T A T G C A C G T A C T G G A T C
p-value:1e-11
log p-value:-2.558e+01
Information Content per bp:1.742
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.4 +/- 22.6bp
Average Position of motif in Background61.3 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:RCAGAGCCGAATGGCT
------CCGATTGGCT
 C T A G A G T C T G C A A T C G C T G A C T A G A G T C G T A C A T C G C G T A T G C A A C G T T C A G A C T G T A G C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:RCAGAGCCGAATGGCT-
---CCGCCCAAGGGCAG
 C T A G A G T C T G C A A T C G C T G A C T A G A G T C G T A C A T C G C G T A T G C A A C G T T C A G A C T G T A G C A G C T A C G T
A C G T A C G T A C G T A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:RCAGAGCCGAATGGCT---
-------TGATTGGCTANN
 C T A G A G T C T G C A A T C G C T G A C T A G A G T C G T A C A T C G C G T A T G C A A C G T T C A G A C T G T A G C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:RCAGAGCCGAATGGCT-----
------CTGATTGGTCNATTT
 C T A G A G T C T G C A A T C G C T G A C T A G A G T C G T A C A T C G C G T A T G C A A C G T T C A G A C T G T A G C A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

POL001.1_MTE/Jaspar

Match Rank:5
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-RCAGAGCCGAATGGCT--
TTTCGAGCGGAACGGTCGC
 A C G T C T A G A G T C T G C A A T C G C T G A C T A G A G T C G T A C A T C G C G T A T G C A A C G T T C A G A C T G T A G C A G C T A C G T A C G T
A C G T G A C T A G C T A G T C C T A G C G T A C T A G A G T C A T C G T A C G C G T A C T A G A G T C A C T G A T C G C G A T G A T C T A C G A G C T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:RCAGAGCCGAATGGCT
-CGGAGC---------
 C T A G A G T C T G C A A T C G C T G A C T A G A G T C G T A C A T C G C G T A T G C A A C G T T C A G A C T G T A G C A G C T
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:RCAGAGCCGAATGGCT--
AGAGTGCTGATTGGTCCA
 C T A G A G T C T G C A A T C G C T G A C T A G A G T C G T A C A T C G C G T A T G C A A C G T T C A G A C T G T A G C A G C T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.48
Offset:3
Orientation:forward strand
Alignment:RCAGAGCCGAATGGCT
---CAGCC--------
 C T A G A G T C T G C A A T C G C T G A C T A G A G T C G T A C A T C G C G T A T G C A A C G T T C A G A C T G T A G C A G C T
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:9
Score:0.47
Offset:2
Orientation:forward strand
Alignment:RCAGAGCCGAATGGCT
--GGGGCCCAAGGGGG
 C T A G A G T C T G C A A T C G C T G A C T A G A G T C G T A C A T C G C G T A T G C A A C G T T C A G A C T G T A G C A G C T
A C G T A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

VENTX/MA0724.1/Jaspar

Match Rank:10
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:RCAGAGCCGAATGGCT
-------CTAATCGNT
 C T A G A G T C T G C A A T C G C T G A C T A G A G T C G T A C A T C G C G T A T G C A A C G T T C A G A C T G T A G C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T