Information for 2-GTGGCTTTTTGCC (Motif 6)

C T A G A G C T A C T G A C T G A G T C G A C T A C G T C G A T A C G T C G A T A T C G A G T C A T G C
Reverse Opposite:
A T C G C T A G A T G C C G T A C G T A C G T A C G T A C T G A C T A G A G T C G T A C C T G A A G T C
p-value:1e-11
log p-value:-2.558e+01
Information Content per bp:1.813
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.4 +/- 24.6bp
Average Position of motif in Background68.8 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.80
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTGGCTTTTTGCC--
CTTGGCANNNTGCCAA
 A C G T C T A G A G C T A C T G A C T G A G T C G A C T A C G T C G A T A C G T C G A T A T C G A G T C A T G C A C G T A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTGGCTTTTTGCC-
TTGGCATGGTGCCA
 C T A G A G C T A C T G A C T G A G T C G A C T A C G T C G A T A C G T C G A T A T C G A G T C A T G C A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTGGCTTTTTGCC--
-TGGCAGNCTGCCAG
 C T A G A G C T A C T G A C T G A G T C G A C T A C G T C G A T A C G T C G A T A T C G A G T C A T G C A C G T A C G T
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTGGCTTTTTGCC--
-TGACCTTTGCCCTA
 C T A G A G C T A C T G A C T G A G T C G A C T A C G T C G A T A C G T C G A T A T C G A G T C A T G C A C G T A C G T
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGGCTTTTTGCC---
-TGACCTTTGCCCTAN
 C T A G A G C T A C T G A C T G A G T C G A C T A C G T C G A T A C G T C G A T A T C G A G T C A T G C A C G T A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GTGGCTTTTTGCC
NNATTGGACTTTNGNN
 A C G T A C G T A C G T C T A G A G C T A C T G A C T G A G T C G A C T A C G T C G A T A C G T C G A T A T C G A G T C A T G C
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GTGGCTTTTTGCC--
-TGACCTTTGCCCCA
 C T A G A G C T A C T G A C T G A G T C G A C T A C G T C G A T A C G T C G A T A T C G A G T C A T G C A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Rarb/MA0857.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGGCTTTTTGCC----
-TGACCTTTTGACCTTT
 C T A G A G C T A C T G A C T G A G T C G A C T A C G T C G A T A C G T C G A T A T C G A G T C A T G C A C G T A C G T A C G T A C G T
A C G T G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

Rarg/MA0859.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GTGGCTTTTTGCC---
TTGACCTTTTGACCTT
 C T A G A G C T A C T G A C T G A G T C G A C T A C G T C G A T A C G T C G A T A T C G A G T C A T G C A C G T A C G T A C G T
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTGGCTTTTTGCC---
-TGACCTTTTGACCTC
 C T A G A G C T A C T G A C T G A G T C G A C T A C G T C G A T A C G T C G A T A T C G A G T C A T G C A C G T A C G T A C G T
A C G T A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C