Information for 10-RAGGYCARAGCGA (Motif 18)

T C A G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A A C T G A G T C A C T G C G T A
Reverse Opposite:
C G A T A G T C A C T G A G T C A C G T A G C T A C G T A C T G T C A G A G T C A G T C A C G T A G T C
p-value:1e-9
log p-value:-2.085e+01
Information Content per bp:1.893
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.8 +/- 19.4bp
Average Position of motif in Background51.5 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-RAGGYCARAGCGA
TRAGGTCA------
 A C G T T C A G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A A C T G A G T C A C T G C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RAGGYCARAGCGA
AAGGTCAC-----
 T C A G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A A C T G A G T C A C T G C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-RAGGYCARAGCGA-
AAAGATCAAAGGGTT
 A C G T T C A G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A A C T G A G T C A C T G C G T A A C G T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:RAGGYCARAGCGA
-AGGTCAAGGTCA
 T C A G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A A C T G A G T C A C T G C G T A
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RAGGYCARAGCGA
CAAAGGTCAG-----
 A C G T A C G T T C A G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A A C T G A G T C A C T G C G T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:RAGGYCARAGCGA
-AGGTCAAGGTCA
 T C A G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A A C T G A G T C A C T G C G T A
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RAGGYCARAGCGA
AGRGGTCA------
 A C G T T C A G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A A C T G A G T C A C T G C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--RAGGYCARAGCGA
TCAAGGTCAN-----
 A C G T A C G T T C A G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A A C T G A G T C A C T G C G T A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--RAGGYCARAGCGA
ARGAGGMCAAAATGW
 A C G T A C G T T C A G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A A C T G A G T C A C T G C G T A
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

TCF7L2/MA0523.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RAGGYCARAGCGA
AAAGATCAAAGGAA
 A C G T T C A G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A A C T G A G T C A C T G C G T A
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A