Information for 9-GAGGGCAAAGGCG (Motif 17)

A T C G C T G A C T A G A C T G A C T G G T A C C G T A C G T A C T G A A C T G A C T G G T A C A C T G
Reverse Opposite:
G T A C A C T G A G T C G T A C A G C T A C G T A C G T A C T G A G T C A G T C A G T C A G C T A T G C
p-value:1e-9
log p-value:-2.144e+01
Information Content per bp:1.825
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif17.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.5 +/- 30.1bp
Average Position of motif in Background48.1 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAGGGCAAAGGCG-
TAGGGCAAAGGTCA
 A T C G C T G A C T A G A C T G A C T G G T A C C G T A C G T A C T G A A C T G A C T G G T A C A C T G A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCAAAGGCG-
GTAGGGCAAAGGTCA
 A C G T A T C G C T G A C T A G A C T G A C T G G T A C C G T A C G T A C T G A A C T G A C T G G T A C A C T G A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAGGGCAAAGGCG
-AAGGCAAGTGT-
 A T C G C T G A C T A G A C T G A C T G G T A C C G T A C G T A C T G A A C T G A C T G G T A C A C T G
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAGGGCAAAGGCG-
TGGGGCAAAGGTCA
 A T C G C T G A C T A G A C T G A C T G G T A C C G T A C G T A C T G A A C T G A C T G G T A C A C T G A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCAAAGGCG
TNNGGGCAG-----
 A C G T A T C G C T G A C T A G A C T G A C T G G T A C C G T A C G T A C T G A A C T G A C T G G T A C A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGGGCAAAGGCG
-AAAACAAAGG--
 A T C G C T G A C T A G A C T G A C T G G T A C C G T A C G T A C T G A A C T G A C T G G T A C A C T G
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGGGCAAAGGCG
-AGGTCAAGGTCA
 A T C G C T G A C T A G A C T G A C T G G T A C C G T A C G T A C T G A A C T G A C T G G T A C A C T G
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCAAAGGCG-
AGAGTCCAAAGTCCA
 A C G T A T C G C T G A C T A G A C T G A C T G G T A C C G T A C G T A C T G A A C T G A C T G G T A C A C T G A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

NR2C2/MA0504.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCAAAGGCG-
AGGGGTCAGAGGTCA
 A C G T A T C G C T G A C T A G A C T G A C T G G T A C C G T A C G T A C T G A A C T G A C T G G T A C A C T G A C G T
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGGGCAAAGGCG
-AGGTCAAGGTCA
 A T C G C T G A C T A G A C T G A C T G G T A C C G T A C G T A C T G A A C T G A C T G G T A C A C T G
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A