Information for 7-CCGCGCAGCG (Motif 12)

A G T C A T G C A T C G A T G C A C T G A T G C C T G A A C T G A T G C A T C G
Reverse Opposite:
A T G C T A C G A G T C A G C T A T C G A G T C A T C G A T G C A T C G C T A G
p-value:1e-10
log p-value:-2.318e+01
Information Content per bp:1.815
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.97%
Number of Background Sequences with motif262.0
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets52.6 +/- 24.0bp
Average Position of motif in Background49.1 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0199.1_Zfp161_2/Jaspar

Match Rank:1
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-CCGCGCAGCG---
GCCGCGCAGTGCGT
 A C G T A G T C A T G C A T C G A T G C A C T G A T G C C T G A A C T G A T G C A T C G A C G T A C G T A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCGCGCAGCG
---CGGAGC-
 A G T C A T G C A T C G A T G C A C T G A T G C C T G A A C T G A T G C A T C G
A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCGCGCAGCG
---CACAGN-
 A G T C A T G C A T C G A T G C A C T G A T G C C T G A A C T G A T G C A T C G
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

NRF1/MA0506.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCGCGCAGCG--
-TGCGCAGGCGC
 A G T C A T G C A T C G A T G C A C T G A T G C C T G A A C T G A T G C A T C G A C G T A C G T
A C G T A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CCGCGCAGCG-
GACCCCCCGCTGCGC
 A C G T A C G T A C G T A C G T A G T C A T G C A T C G A T G C A C T G A T G C C T G A A C T G A T G C A T C G A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCGCGCAGCG
---NGAAGC-
 A G T C A T G C A T C G A T G C A C T G A T G C C T G A A C T G A T G C A T C G
A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CCGCGCAGCG
-----CAGCC
 A G T C A T G C A T C G A T G C A C T G A T G C C T G A A C T G A T G C A T C G
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCGCGCAGCG-
GACCCCCCGCTGTGC
 A C G T A C G T A C G T A C G T A G T C A T G C A T C G A T G C A C T G A T G C C T G A A C T G A T G C A T C G A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCGCGCAGCG-----
CCACACAGCAGGAGA
 A G T C A T G C A T C G A T G C A C T G A T G C C T G A A C T G A T G C A T C G A C G T A C G T A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCGCGCAGCG-
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A G T C A T G C A T C G A T G C A C T G A T G C C T G A A C T G A T G C A T C G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C