Information for 3-GTACAAAAGT (Motif 13)

A T C G A C G T G T C A A G T C C G T A C G T A C T G A C T G A C T A G A G C T
Reverse Opposite:
C T G A A G T C A G C T A G C T A C G T A C G T A C T G A C G T C G T A T A G C
p-value:1e-9
log p-value:-2.260e+01
Information Content per bp:1.863
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif25.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets25.6 +/- 14.6bp
Average Position of motif in Background49.6 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GTACAAAAGT
AAAACAAAGG-
 A C G T A T C G A C G T G T C A A G T C C G T A C G T A C T G A C T G A C T A G A G C T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GTACAAAAGT
-RACAAWGG-
 A T C G A C G T G T C A A G T C C G T A C G T A C T G A C T G A C T A G A G C T
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTACAAAAGT
RNAACAATGG-
 A C G T A T C G A C G T G T C A A G T C C G T A C G T A C T G A C T G A C T A G A G C T
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTACAAAAGT
RAACAATGGN
 A T C G A C G T G T C A A G T C C G T A C G T A C T G A C T G A C T A G A G C T
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTACAAAAGT
GGAACAAAGR-
 A C G T A T C G A C G T G T C A A G T C C G T A C G T A C T G A C T G A C T A G A G C T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTACAAAAGT
VRRACAAWGG-
 A C G T A T C G A C G T G T C A A G T C C G T A C G T A C T G A C T G A C T A G A G C T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GTACAAAAGT---
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A T C G A C G T G T C A A G T C C G T A C G T A C T G A C T G A C T A G A G C T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTACAAAAGT-----
GTATAAAAGGCGGGG
 A T C G A C G T G T C A A G T C C G T A C G T A C T G A C T G A C T A G A G C T A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTACAAAAGT-----
GTATAAAAGGCGGGG
 A T C G A C G T G T C A A G T C C G T A C G T A C T G A C T G A C T A G A G C T A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTACAAAAGT
-AACAAAGG-
 A T C G A C G T G T C A A G T C C G T A C G T A C T G A C T G A C T A G A G C T
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T