Information for 3-GHAGGGAAGHGCC (Motif 3)

A T C G G T C A G T C A A C T G A T C G A C T G C T G A C G T A A C T G G A T C A C T G A G T C A T G C
Reverse Opposite:
A T C G C T A G A G T C C A T G G T A C A C G T A G C T A G T C A T G C G T A C A C G T C A G T A T G C
p-value:1e-11
log p-value:-2.759e+01
Information Content per bp:1.785
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif26.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets44.0 +/- 23.5bp
Average Position of motif in Background51.7 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GHAGGGAAGHGCC--
---GGGAAATCCCCN
 A T C G G T C A G T C A A C T G A T C G A C T G C T G A C G T A A C T G G A T C A C T G A G T C A T G C A C G T A C G T
A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GHAGGGAAGHGCC
---TGGAACAGMA
 A T C G G T C A G T C A A C T G A T C G A C T G C T G A C G T A A C T G G A T C A C T G A G T C A T G C
A C G T A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GHAGGGAAGHGCC-
----GGAAANCCCC
 A T C G G T C A G T C A A C T G A T C G A C T G C T G A C G T A A C T G G A T C A C T G A G T C A T G C A C G T
A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GHAGGGAAGHGCC
---GGGAATTTCC
 A T C G G T C A G T C A A C T G A T C G A C T G C T G A C G T A A C T G G A T C A C T G A G T C A T G C
A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GHAGGGAAGHGCC
-TGGGGAAGGGCM
 A T C G G T C A G T C A A C T G A T C G A C T G C T G A C G T A A C T G G A T C A C T G A G T C A T G C
A C G T G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GHAGGGAAGHGCC-
----GGAAATCCCC
 A T C G G T C A G T C A A C T G A T C G A C T G C T G A C G T A A C T G G A T C A C T G A G T C A T G C A C G T
A C G T A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GHAGGGAAGHGCC-
----GGAAATTCCC
 A T C G G T C A G T C A A C T G A T C G A C T G C T G A C G T A A C T G G A T C A C T G A G T C A T G C A C G T
A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFKB2/MA0778.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GHAGGGAAGHGCC--
--AGGGGATTCCCCT
 A T C G G T C A G T C A A C T G A T C G A C T G C T G A C G T A A C T G G A T C A C T G A G T C A T G C A C G T A C G T
A C G T A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFKB1/MA0105.4/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GHAGGGAAGHGCC--
--AGGGGAATCCCCT
 A T C G G T C A G T C A A C T G A T C G A C T G C T G A C G T A A C T G G A T C A C T G A G T C A T G C A C G T A C G T
A C G T A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GHAGGGAAGHGCC--
---GGGGATTCCCCC
 A T C G G T C A G T C A A C T G A T C G A C T G C T G A C G T A A C T G G A T C A C T G A G T C A T G C A C G T A C G T
A C G T A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C