Information for 3-AAGCTAGCTAGCG (Motif 9)

C G T A C G T A A T C G G T A C C G A T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C T G
Reverse Opposite:
A G T C A T C G G T A C A C G T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C G T A C G T
p-value:1e-12
log p-value:-2.822e+01
Information Content per bp:1.908
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.2 +/- 16.5bp
Average Position of motif in Background59.7 +/- 8.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0032.1_Evx2/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAGCTAGCTAGCG---
ANCGCTAATTAGCGGTN
 A C G T C G T A C G T A A T C G G T A C C G A T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C T G A C G T A C G T A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAGCTAGCTAGCG--
GAAAACTAGTTAACATC
 A C G T A C G T C G T A C G T A A T C G G T A C C G A T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C T G A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0155.1_Prrx2/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAGCTAGCTAGCG---
AAAGCTAATTAGCGAAA
 A C G T C G T A C G T A A T C G G T A C C G A T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C T G A C G T A C G T A C G T
C G T A T G C A G T C A T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A T G C T G A C G T A C T G A

PH0168.1_Hnf1b/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AAGCTAGCTAGCG---
ANNNCTAGTTAACNGNN
 A C G T C G T A C G T A A T C G G T A C C G A T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C T G A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Nr2e3/MA0164.1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AAGCTAGCTAGCG
AAGCTTG------
 C G T A C G T A A T C G G T A C C G A T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C T G
C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AAGCTAGCTAGCG---
ACCCCTAATTAGCGGTG
 A C G T C G T A C G T A A T C G G T A C C G A T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C T G A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PB0051.1_Osr2_1/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AAGCTAGCTAGCG-----
--CNNNGCTACTGTANNN
 C G T A C G T A A T C G G T A C C G A T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

PB0050.1_Osr1_1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AAGCTAGCTAGCG-----
--TNNTGCTACTGTNNNN
 C G T A C G T A A T C G G T A C C G A T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

HMBOX1/MA0895.1/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:forward strand
Alignment:AAGCTAGCTAGCG
--ACTAGTTAAC-
 C G T A C G T A A T C G G T A C C G A T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C T G
A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T

PH0097.1_Lhx6_2/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AAGCTAGCTAGCG---
TCCACTAATTAGCGGTT
 A C G T C G T A C G T A A T C G G T A C C G A T C G T A A C T G A G T C A C G T C G T A A C T G A T G C A C T G A C G T A C G T A C G T
G C A T T G A C G A T C T C G A G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G T C C A T G C T A G C G A T A C G T