Information for 4-BGTACCAGCCAAT (Motif 8)

A T G C A T C G A G C T G T C A A G T C A G T C C G T A A T C G A G T C A G T C C G T A C T G A C G A T
Reverse Opposite:
C G T A A G C T A C G T A C T G A C T G A T G C A C G T C T A G A C T G C A G T C T G A A T G C T A C G
p-value:1e-11
log p-value:-2.641e+01
Information Content per bp:1.772
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 21.7bp
Average Position of motif in Background36.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:forward strand
Alignment:BGTACCAGCCAAT--
---ACTAGCCAATCA
 A T G C A T C G A G C T G T C A A G T C A G T C C G T A A T C G A G T C A G T C C G T A C T G A C G A T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:BGTACCAGCCAAT
----BCAGACWA-
 A T G C A T C G A G C T G T C A A G T C A G T C C G T A A T C G A G T C A G T C C G T A C T G A C G A T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.67
Offset:6
Orientation:forward strand
Alignment:BGTACCAGCCAAT---
------AGCCAATCGG
 A T G C A T C G A G C T G T C A A G T C A G T C C G T A A T C G A G T C A G T C C G T A C T G A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:BGTACCAGCCAAT
------TGCCAA-
 A T G C A T C G A G C T G T C A A G T C A G T C C G T A A T C G A G T C A G T C C G T A C T G A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:BGTACCAGCCAAT
-GGACCACCCACG
 A T G C A T C G A G C T G T C A A G T C A G T C C G T A A T C G A G T C A G T C C G T A C T G A C G A T
A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.63
Offset:4
Orientation:forward strand
Alignment:BGTACCAGCCAAT
----CGTGCCAAG
 A T G C A T C G A G C T G T C A A G T C A G T C C G T A A T C G A G T C A G T C C G T A C T G A C G A T
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

PB0167.1_Sox13_2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--BGTACCAGCCAAT--
ANNTNCCCACCCANNAC
 A C G T A C G T A T G C A T C G A G C T G T C A A G T C A G T C C G T A A T C G A G T C A G T C C G T A C T G A C G A T A C G T A C G T
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C

NFYB/MA0502.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:BGTACCAGCCAAT---
-AAATGGACCAATCAG
 A T G C A T C G A G C T G T C A A G T C A G T C C G T A A T C G A G T C A G T C C G T A C T G A C G A T A C G T A C G T A C G T
A C G T T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:BGTACCAGCCAAT
----CCAGACAG-
 A T G C A T C G A G C T G T C A A G T C A G T C C G T A A T C G A G T C A G T C C G T A C T G A C G A T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-BGTACCAGCCAAT---
TACGCCCCGCCACTCTG
 A C G T A T G C A T C G A G C T G T C A A G T C A G T C C G T A A T C G A G T C A G T C C G T A C T G A C G A T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G