Information for 6-ATGTAACTAG (Motif 23)

T C G A A C G T A C T G C G A T C G T A C G T A G T A C C G A T C G T A C T A G
Reverse Opposite:
A G T C C G A T C G T A A C T G A C G T C G A T C G T A A G T C C G T A A G C T
p-value:1e-7
log p-value:-1.750e+01
Information Content per bp:1.854
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif114.7
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets53.5 +/- 25.7bp
Average Position of motif in Background48.2 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:ATGTAACTAG-
-GTTAACTAGN
 T C G A A C G T A C T G C G A T C G T A C G T A G T A C C G A T C G T A C T A G A C G T
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-ATGTAACTAG----
NNNGTAACTANGNNA
 A C G T T C G A A C G T A C T G C G A T C G T A C G T A G T A C C G A T C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--ATGTAACTAG-----
GANGTTAACTAGTTTNN
 A C G T A C G T T C G A A C G T A C T G C G A T C G T A C G T A G T A C C G A T C G T A C T A G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

LBX1/MA0618.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:ATGTAACTAG
--TTAATTAG
 T C G A A C G T A C T G C G A T C G T A C G T A G T A C C G A T C G T A C T A G
A C G T A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G

DMRT3/MA0610.1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ATGTAACTAG
AATGTATCAAT
 A C G T T C G A A C G T A C T G C G A T C G T A C G T A G T A C C G A T C G T A C T A G
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ATGTAACTAG
TATGTAAATAT
 A C G T T C G A A C G T A C T G C G A T C G T A C G T A G T A C C G A T C G T A C T A G
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T

VSX2/MA0726.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATGTAACTAG
--NTAATTAG
 T C G A A C G T A C T G C G A T C G T A C G T A G T A C C G A T C G T A C T A G
A C G T A C G T T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:forward strand
Alignment:ATGTAACTAG-
---TAATTAGN
 T C G A A C G T A C T G C G A T C G T A C G T A G T A C C G A T C G T A C T A G A C G T
A C G T A C G T A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C

PH0168.1_Hnf1b/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATGTAACTAG----
AGCTGTTAACTAGCCGT
 A C G T A C G T A C G T T C G A A C G T A C T G C G A T C G T A C G T A G T A C C G A T C G T A C T A G A C G T A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

NFIL3/MA0025.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATGTAACTAG
TTATGTAACAT-
 A C G T A C G T T C G A A C G T A C T G C G A T C G T A C G T A G T A C C G A T C G T A C T A G
C G A T A C G T C G T A A G C T C T A G A C G T C G T A C T G A A G T C T C A G G A C T A C G T