Information for 4-GACACCAGAG (Motif 2)

A C T G C T G A A G T C C G T A G T A C A G T C C G T A A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C G T C T A G C A T G A C G T A C T G A G C T A G T C
p-value:1e-35
log p-value:-8.222e+01
Information Content per bp:1.920
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif5.42%
Number of Background Sequences with motif208.6
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets64.0 +/- 27.1bp
Average Position of motif in Background50.9 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GACACCAGAG-
-AAACCACAGC
 A C T G C T G A A G T C C G T A G T A C A G T C C G T A A C T G C G T A A C T G A C G T
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GACACCAGAG-
-ATGCCAGACN
 A C T G C T G A A G T C C G T A G T A C A G T C C G T A A C T G C G T A A C T G A C G T
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GACACCAGAG--
GWAAYHTGAKMC
 A C T G C T G A A G T C C G T A G T A C A G T C C G T A A C T G C G T A A C T G A C G T A C G T
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GACACCAGAG---
-ACATCAAAGGNA
 A C T G C T G A A G T C C G T A G T A C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T
A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GACACCAGAG
NNCACCTGNN
 A C T G C T G A A G T C C G T A G T A C A G T C C G T A A C T G C G T A A C T G
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GACACCAGAG
NAAACCACAG
 A C T G C T G A A G T C C G T A G T A C A G T C C G T A A C T G C G T A A C T G
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

PH0164.1_Six4/Jaspar

Match Rank:7
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GACACCAGAG-
ATAAATGACACCTATCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A A G T C C G T A G T A C A G T C C G T A A C T G C G T A A C T G A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GACACCAGAG--
-AAACCACAGAN
 A C T G C T G A A G T C C G T A G T A C A G T C C G T A A C T G C G T A A C T G A C G T A C G T
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GACACCAGAG--
NWAACCACADNN
 A C T G C T G A A G T C C G T A G T A C A G T C C G T A A C T G C G T A A C T G A C G T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GACACCAGAG
TGACACCT---
 A C G T A C T G C T G A A G T C C G T A G T A C A G T C C G T A A C T G C G T A A C T G
G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T