Information for 9-CCATTGGCTC (Motif 18)

A G T C A G T C C G T A A C G T A C G T A C T G C T A G A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A G T C G T A C C G T A C G T A A C G T A C T G A C T G
p-value:1e-6
log p-value:-1.444e+01
Information Content per bp:1.943
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif24.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets56.7 +/- 26.6bp
Average Position of motif in Background50.3 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGGCTC
CCGATTGGCT-
 A C G T A G T C A G T C C G T A A C G T A C G T A C T G C T A G A G T C A C G T A G T C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCATTGGCTC--
TGATTGGCTANN
 A G T C A G T C C G T A A C G T A C G T A C T G C T A G A G T C A C G T A G T C A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCATTGGCTC
CCATTGTTTT
 A G T C A G T C C G T A A C G T A C G T A C T G C T A G A G T C A C G T A G T C
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCATTGGCTC
CCATTGTTYB
 A G T C A G T C C G T A A C G T A C G T A C T G C T A G A G T C A C G T A G T C
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGGCTC
NCCATTGTTY-
 A C G T A G T C A G T C C G T A A C G T A C G T A C T G C T A G A G T C A C G T A G T C
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCATTGGCTC--
NNNCCATTGTGTNAN
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G C T A G A G T C A C G T A G T C A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCATTGGCTC
CCWTTGTY--
 A G T C A G T C C G T A A C G T A C G T A C T G C T A G A G T C A C G T A G T C
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGGCTC----
CTGATTGGTCNATTT
 A C G T A G T C A G T C C G T A A C G T A C G T A C T G C T A G A G T C A C G T A G T C A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCATTGGCTC--
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G C T A G A G T C A C G T A G T C A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCATTGGCTC
CTCATTGTC--
 A C G T A G T C A G T C C G T A A C G T A C G T A C T G C T A G A G T C A C G T A G T C
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T