Information for 3-CGCCATGTTGGTDCYC (Motif 4)

T A G C A C T G A G T C G T A C G T C A A C G T A T C G G A C T C G A T C A T G A T C G G C A T C A T G A G T C A G C T T A G C
Reverse Opposite:
A T C G T C G A T C A G G T A C C G T A T A G C G T A C C G T A C T G A T A G C G T C A C A G T A C T G A C T G G T A C A T C G
p-value:1e-20
log p-value:-4.739e+01
Information Content per bp:1.560
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.65%
Number of Background Sequences with motif492.2
Percentage of Background Sequences with motif1.04%
Average Position of motif in Targets49.2 +/- 20.5bp
Average Position of motif in Background49.5 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--CGCCATGTTGGTDCYC
GCNGCCATCTTG------
 A C G T A C G T T A G C A C T G A G T C G T A C G T C A A C G T A T C G G A C T C G A T C A T G A T C G G C A T C A T G A G T C A G C T T A G C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CGCCATGTTGGTDCYC
GCCGCCATCTTG------
 A C G T A C G T T A G C A C T G A G T C G T A C G T C A A C G T A T C G G A C T C G A T C A T G A T C G G C A T C A T G A G T C A G C T T A G C
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CGCCATGTTGGTDCYC
GTCCGCCATTA--------
 A C G T A C G T A C G T T A G C A C T G A G T C G T A C G T C A A C G T A T C G G A C T C G A T C A T G A T C G G C A T C A T G A G T C A G C T T A G C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------CGCCATGTTGGTDCYC
TACGCCCCGCCACTCTG------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A C T G A G T C G T A C G T C A A C G T A T C G G A C T C G A T C A T G A T C G G C A T C A T G A G T C A G C T T A G C
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGCCATGTTGGTDCYC
TGCCAA----------
 T A G C A C T G A G T C G T A C G T C A A C G T A T C G G A C T C G A T C A T G A T C G G C A T C A T G A G T C A G C T T A G C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CGCCATGTTGGTDCYC
CGTGCCAAG---------
 A C G T A C G T T A G C A C T G A G T C G T A C G T C A A C G T A T C G G A C T C G A T C A T G A T C G G C A T C A T G A G T C A G C T T A G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2F2/MA0864.1/Jaspar

Match Rank:7
Score:0.52
Offset:-7
Orientation:reverse strand
Alignment:-------CGCCATGTTGGTDCYC
AAAATGGCGCCATTTT-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A C T G A G T C G T A C G T C A A C G T A T C G G A C T C G A T C A T G A T C G G C A T C A T G A G T C A G C T T A G C
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2F3/MA0469.2/Jaspar

Match Rank:8
Score:0.51
Offset:-8
Orientation:reverse strand
Alignment:--------CGCCATGTTGGTDCYC
AAAAATGGCGCCATTTTT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A C T G A G T C G T A C G T C A A C G T A T C G G A C T C G A T C A T G A T C G G C A T C A T G A G T C A G C T T A G C
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CGCCATGTTGGTDCYC
AGCGCGCC------------
 A C G T A C G T A C G T A C G T T A G C A C T G A G T C G T A C G T C A A C G T A T C G G A C T C G A T C A T G A T C G G C A T C A T G A G T C A G C T T A G C
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CGCCATGTTGGTDCYC
--CCTTTGTT------
 T A G C A C T G A G T C G T A C G T C A A C G T A T C G G A C T C G A T C A T G A T C G G C A T C A T G A G T C A G C T T A G C
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T