Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-290 | -6.680e+02 | 0.0000 | 222.0 | 25.72% | 262.4 | 0.56% | motif file (matrix) |
svg |
2 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-257 | -5.932e+02 | 0.0000 | 231.0 | 26.77% | 430.4 | 0.91% | motif file (matrix) |
svg |
3 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-23 | -5.398e+01 | 0.0000 | 201.0 | 23.29% | 5251.7 | 11.13% | motif file (matrix) |
svg |
4 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-23 | -5.341e+01 | 0.0000 | 122.0 | 14.14% | 2398.8 | 5.08% | motif file (matrix) |
svg |
5 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-20 | -4.700e+01 | 0.0000 | 174.0 | 20.16% | 4503.4 | 9.54% | motif file (matrix) |
svg |
6 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-14 | -3.304e+01 | 0.0000 | 132.0 | 15.30% | 3510.1 | 7.44% | motif file (matrix) |
svg |
7 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-11 | -2.684e+01 | 0.0000 | 52.0 | 6.03% | 918.3 | 1.95% | motif file (matrix) |
svg |
8 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-11 | -2.649e+01 | 0.0000 | 230.0 | 26.65% | 8132.2 | 17.23% | motif file (matrix) |
svg |
9 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-11 | -2.649e+01 | 0.0000 | 29.0 | 3.36% | 313.6 | 0.66% | motif file (matrix) |
svg |
10 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-11 | -2.546e+01 | 0.0000 | 164.0 | 19.00% | 5257.7 | 11.14% | motif file (matrix) |
svg |
11 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-7 | -1.816e+01 | 0.0000 | 362.0 | 41.95% | 15492.5 | 32.82% | motif file (matrix) |
svg |
12 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-7 | -1.728e+01 | 0.0000 | 107.0 | 12.40% | 3379.4 | 7.16% | motif file (matrix) |
svg |
13 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-7 | -1.705e+01 | 0.0000 | 223.0 | 25.84% | 8680.3 | 18.39% | motif file (matrix) |
svg |
14 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-7 | -1.688e+01 | 0.0000 | 33.0 | 3.82% | 600.8 | 1.27% | motif file (matrix) |
svg |
15 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-6 | -1.499e+01 | 0.0000 | 156.0 | 18.08% | 5735.9 | 12.15% | motif file (matrix) |
svg |
16 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-6 | -1.498e+01 | 0.0000 | 119.0 | 13.79% | 4067.6 | 8.62% | motif file (matrix) |
svg |
17 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-6 | -1.415e+01 | 0.0000 | 97.0 | 11.24% | 3175.8 | 6.73% | motif file (matrix) |
svg |
18 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-6 | -1.404e+01 | 0.0000 | 64.0 | 7.42% | 1818.6 | 3.85% | motif file (matrix) |
svg |
19 |
| CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-5 | -1.354e+01 | 0.0000 | 6.0 | 0.70% | 18.1 | 0.04% | motif file (matrix) |
svg |
20 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-5 | -1.338e+01 | 0.0000 | 101.0 | 11.70% | 3406.7 | 7.22% | motif file (matrix) |
svg |
21 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-5 | -1.319e+01 | 0.0000 | 56.0 | 6.49% | 1551.8 | 3.29% | motif file (matrix) |
svg |
22 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-5 | -1.231e+01 | 0.0001 | 85.0 | 9.85% | 2797.3 | 5.93% | motif file (matrix) |
svg |
23 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-5 | -1.164e+01 | 0.0001 | 59.0 | 6.84% | 1757.5 | 3.72% | motif file (matrix) |
svg |
24 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-4 | -1.117e+01 | 0.0002 | 54.0 | 6.26% | 1584.6 | 3.36% | motif file (matrix) |
svg |
25 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-4 | -1.009e+01 | 0.0006 | 67.0 | 7.76% | 2194.0 | 4.65% | motif file (matrix) |
svg |
26 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-4 | -9.981e+00 | 0.0006 | 107.0 | 12.40% | 3978.4 | 8.43% | motif file (matrix) |
svg |
27 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-3 | -9.094e+00 | 0.0015 | 33.0 | 3.82% | 876.6 | 1.86% | motif file (matrix) |
svg |
28 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-3 | -8.786e+00 | 0.0020 | 244.0 | 28.27% | 10824.4 | 22.93% | motif file (matrix) |
svg |
29 |
| GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.496e+00 | 0.0026 | 10.0 | 1.16% | 132.6 | 0.28% | motif file (matrix) |
svg |
30 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-3 | -8.480e+00 | 0.0026 | 22.0 | 2.55% | 502.3 | 1.06% | motif file (matrix) |
svg |
31 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-3 | -8.392e+00 | 0.0027 | 35.0 | 4.06% | 989.7 | 2.10% | motif file (matrix) |
svg |
32 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-3 | -8.390e+00 | 0.0027 | 16.0 | 1.85% | 306.9 | 0.65% | motif file (matrix) |
svg |
33 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -8.073e+00 | 0.0034 | 133.0 | 15.41% | 5423.5 | 11.49% | motif file (matrix) |
svg |
34 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-3 | -7.939e+00 | 0.0038 | 37.0 | 4.29% | 1094.1 | 2.32% | motif file (matrix) |
svg |
35 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-3 | -7.887e+00 | 0.0039 | 91.0 | 10.54% | 3462.2 | 7.33% | motif file (matrix) |
svg |
36 |
| Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-3 | -7.690e+00 | 0.0046 | 21.0 | 2.43% | 497.2 | 1.05% | motif file (matrix) |
svg |
37 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -7.228e+00 | 0.0071 | 34.0 | 3.94% | 1016.0 | 2.15% | motif file (matrix) |
svg |
38 |
| GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-3 | -7.100e+00 | 0.0079 | 12.0 | 1.39% | 217.1 | 0.46% | motif file (matrix) |
svg |
39 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-3 | -7.026e+00 | 0.0083 | 149.0 | 17.27% | 6354.0 | 13.46% | motif file (matrix) |
svg |
40 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -6.935e+00 | 0.0089 | 36.0 | 4.17% | 1116.8 | 2.37% | motif file (matrix) |
svg |
41 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.825e+00 | 0.0096 | 16.0 | 1.85% | 355.5 | 0.75% | motif file (matrix) |
svg |
42 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -6.526e+00 | 0.0127 | 29.0 | 3.36% | 857.8 | 1.82% | motif file (matrix) |
svg |
43 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -6.479e+00 | 0.0130 | 35.0 | 4.06% | 1105.5 | 2.34% | motif file (matrix) |
svg |
44 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-2 | -6.477e+00 | 0.0130 | 89.0 | 10.31% | 3532.3 | 7.48% | motif file (matrix) |
svg |
45 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-2 | -6.445e+00 | 0.0130 | 58.0 | 6.72% | 2106.1 | 4.46% | motif file (matrix) |
svg |
46 |
| Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-2 | -6.268e+00 | 0.0150 | 4.0 | 0.46% | 28.5 | 0.06% | motif file (matrix) |
svg |
47 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.247e+00 | 0.0150 | 36.0 | 4.17% | 1163.5 | 2.46% | motif file (matrix) |
svg |
48 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.228e+00 | 0.0150 | 65.0 | 7.53% | 2445.6 | 5.18% | motif file (matrix) |
svg |
49 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-2 | -5.792e+00 | 0.0227 | 70.0 | 8.11% | 2724.8 | 5.77% | motif file (matrix) |
svg |
50 |
| GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.748e+00 | 0.0232 | 11.0 | 1.27% | 223.4 | 0.47% | motif file (matrix) |
svg |
51 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -5.739e+00 | 0.0232 | 32.0 | 3.71% | 1031.0 | 2.18% | motif file (matrix) |
svg |
52 |
| GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.730e+00 | 0.0232 | 8.0 | 0.93% | 131.3 | 0.28% | motif file (matrix) |
svg |
53 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-2 | -5.684e+00 | 0.0233 | 42.0 | 4.87% | 1465.8 | 3.11% | motif file (matrix) |
svg |
54 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -5.684e+00 | 0.0233 | 181.0 | 20.97% | 8190.0 | 17.35% | motif file (matrix) |
svg |
55 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-2 | -5.539e+00 | 0.0260 | 25.0 | 2.90% | 755.5 | 1.60% | motif file (matrix) |
svg |
56 |
| Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.530e+00 | 0.0260 | 117.0 | 13.56% | 5016.6 | 10.63% | motif file (matrix) |
svg |
57 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -5.237e+00 | 0.0340 | 7.0 | 0.81% | 113.1 | 0.24% | motif file (matrix) |
svg |
58 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-2 | -5.199e+00 | 0.0347 | 31.0 | 3.59% | 1028.2 | 2.18% | motif file (matrix) |
svg |
59 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.036e+00 | 0.0401 | 19.0 | 2.20% | 545.0 | 1.15% | motif file (matrix) |
svg |
60 |
| PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer | 1e-2 | -5.012e+00 | 0.0404 | 34.0 | 3.94% | 1173.0 | 2.48% | motif file (matrix) |
svg |
61 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-2 | -4.891e+00 | 0.0448 | 57.0 | 6.60% | 2224.3 | 4.71% | motif file (matrix) |
svg |
62 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.820e+00 | 0.0474 | 35.0 | 4.06% | 1232.5 | 2.61% | motif file (matrix) |
svg |
63 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.613e+00 | 0.0573 | 32.0 | 3.71% | 1118.6 | 2.37% | motif file (matrix) |
svg |