Information for 13-CTCCGTTTGTCCT (Motif 17)

A G T C G A C T A T G C G A T C A C T G A G C T A G C T A C G T A T C G A G C T A G T C G A T C G A C T
Reverse Opposite:
C T G A C T A G T C A G T C G A T A G C T G C A T C G A T C G A T G A C C T A G T A C G C T G A T C A G
p-value:1e-9
log p-value:-2.137e+01
Information Content per bp:1.470
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.6 +/- 25.8bp
Average Position of motif in Background44.6 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CTCCGTTTGTCCT
---CCTTTGTTTT
 A G T C G A C T A T G C G A T C A C T G A G C T A G C T A C G T A T C G A G C T A G T C G A T C G A C T
A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTCCGTTTGTCCT---
-WCATTTTGKCCTCYT
 A G T C G A C T A T G C G A T C A C T G A G C T A G C T A C G T A T C G A G C T A G T C G A T C G A C T A C G T A C G T A C G T
A C G T C G T A G A T C C T G A A C G T A C G T A C G T C A G T C T A G A C G T G T A C G T A C G A C T A G T C G A T C A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTCCGTTTGTCCT
---YCTTTGTTCC
 A G T C G A C T A T G C G A T C A C T G A G C T A G C T A C G T A T C G A G C T A G T C G A T C G A C T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTCCGTTTGTCCT---
NTGACTCANTTTTTCCANTN
 A C G T A C G T A C G T A C G T A G T C G A C T A T G C G A T C A C T G A G C T A G C T A C G T A T C G A G C T A G T C G A T C G A C T A C G T A C G T A C G T
T C G A G C A T A C T G C G T A A T G C G C A T G T A C C G T A A G C T G C A T A G C T A G C T G A C T A G C T A G T C A G T C G C T A A G C T G A C T A T G C

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTCCGTTTGTCCT
---CCATTGTTTT
 A G T C G A C T A T G C G A T C A C T G A G C T A G C T A C G T A T C G A G C T A G T C G A T C G A C T
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:CTCCGTTTGTCCT--
-------TGACCTYA
 A G T C G A C T A T G C G A T C A C T G A G C T A G C T A C G T A T C G A G C T A G T C G A T C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTCCGTTTGTCCT
--NCCATTGTTC-
 A G T C G A C T A T G C G A T C A C T G A G C T A G C T A C G T A T C G A G C T A G T C G A T C G A C T
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTCCGTTTGTCCT
---CCATTGTTNY
 A G T C G A C T A T G C G A T C A C T G A G C T A G C T A C G T A T C G A G C T A G T C G A T C G A C T
A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTCCGTTTGTCCT
---CCWTTGTY--
 A G T C G A C T A T G C G A T C A C T G A G C T A G C T A C G T A T C G A G C T A G T C G A T C G A C T
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTCCGTTTGTCCT----
-GNNATTTGTCGTAANN
 A G T C G A C T A T G C G A T C A C T G A G C T A G C T A C G T A T C G A G C T A G T C G A T C G A C T A C G T A C G T A C G T A C G T
A C G T T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T