Information for 7-GCAGCAAAGC (Motif 15)

A C T G G A T C C G T A A T C G G T A C C T G A C T G A G T C A A C T G G A T C
Reverse Opposite:
C T A G A G T C C A G T G A C T A G C T A C T G A T G C A C G T C T A G T G A C
p-value:1e-9
log p-value:-2.196e+01
Information Content per bp:1.819
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.48%
Number of Background Sequences with motif406.4
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets41.1 +/- 26.9bp
Average Position of motif in Background51.8 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAAAGC-----
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A A T C G G T A C C T G A C T G A G T C A A C T G G A T C A C G T A C G T A C G T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCAGCAAAGC------
GCAGCCAAGCGTGACN
 A C T G G A T C C G T A A T C G G T A C C T G A C T G A G T C A A C T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCAGCAAAGC----
NNNAGATCAAAGGANNN
 A C G T A C G T A C G T A C T G G A T C C G T A A T C G G T A C C T G A C T G A G T C A A C T G G A T C A C G T A C G T A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAGCAAAGC
GGAACAAAGR
 A C T G G A T C C G T A A T C G G T A C C T G A C T G A G T C A A C T G G A T C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAGCAAAGC
ACATCAAAGG
 A C T G G A T C C G T A A T C G G T A C C T G A C T G A G T C A A C T G G A T C
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCAGCAAAGC-----
SCAGYCADGCATGAC
 A C T G G A T C C G T A A T C G G T A C C T G A C T G A G T C A A C T G G A T C A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

TCF7L2/MA0523.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCAGCAAAGC--
AAAGATCAAAGGAA
 A C G T A C G T A C T G G A T C C G T A A T C G G T A C C T G A C T G A G T C A A C T G G A T C A C G T A C G T
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

PB0082.1_Tcf3_1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCAGCAAAGC----
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C T G G A T C C G T A A T C G G T A C C T G A C T G A G T C A A C T G G A T C A C G T A C G T A C G T A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCAGCAAAGC--
ACATCAAAGGNA
 A C T G G A T C C G T A A T C G G T A C C T G A C T G A G T C A A C T G G A T C A C G T A C G T
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCAGCAAAGC----
NANAGATCAAAGGGNNN
 A C G T A C G T A C G T A C T G G A T C C G T A A T C G G T A C C T G A C T G A G T C A A C T G G A T C A C G T A C G T A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T