Information for 6-GTAAGTGCAT (Motif 8)

A T C G A C G T C T G A G T C A T A C G C G A T C T A G A T G C G T C A A C G T
Reverse Opposite:
C G T A A C G T A T C G A G T C C G T A A T G C C A G T A G C T G T C A A T G C
p-value:1e-10
log p-value:-2.481e+01
Information Content per bp:1.836
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif47.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets39.9 +/- 21.9bp
Average Position of motif in Background54.8 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GTAAGTGCAT
TTAAGTGC--
 A T C G A C G T C T G A G T C A T A C G C G A T C T A G A T G C G T C A A C G T
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GTAAGTGCAT
TTAAGTGCTT
 A T C G A C G T C T G A G T C A T A C G C G A T C T A G A T G C G T C A A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GTAAGTGCAT---
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A C G T A T C G A C G T C T G A G T C A T A C G C G A T C T A G A T G C G T C A A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTAAGTGCAT
TTAAGTGGN-
 A T C G A C G T C T G A G T C A T A C G C G A T C T A G A T G C G T C A A C G T
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTAAGTGCAT
TTAAGTGGT-
 A T C G A C G T C T G A G T C A T A C G C G A T C T A G A T G C G T C A A C G T
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GTAAGTGCAT---
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A T C G A C G T C T G A G T C A T A C G C G A T C T A G A T G C G T C A A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GTAAGTGCAT--
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A C G T A T C G A C G T C T G A G T C A T A C G C G A T C T A G A T G C G T C A A C G T A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTAAGTGCAT
GGGTACGTGC--
 A C G T A C G T A T C G A C G T C T G A G T C A T A C G C G A T C T A G A T G C G T C A A C G T
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTAAGTGCAT-----
NNGTATGTGCACATNNN
 A C G T A C G T A T C G A C G T C T G A G T C A T A C G C G A T C T A G A T G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTAAGTGCAT
TTRAGTGSYK
 A T C G A C G T C T G A G T C A T A C G C G A T C T A G A T G C G T C A A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T