Information for 10-ACAATGGCATTTC (Motif 6)

T C G A T G A C G T C A G T C A C G A T A C T G A T C G A G T C G T C A A C G T A C G T A C G T G A T C
Reverse Opposite:
C A T G C G T A T C G A C G T A A C G T A C T G T A G C G T A C C G T A A C G T A C G T A C T G A C G T
p-value:1e-12
log p-value:-2.776e+01
Information Content per bp:1.786
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif28.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets59.2 +/- 21.5bp
Average Position of motif in Background53.9 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox1/MA0870.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ACAATGGCATTTC-
AACAATAACATTGTT
 A C G T T C G A T G A C G T C A G T C A C G A T A C T G A T C G A G T C G T C A A C G T A C G T A C G T G A T C A C G T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGCATTTC
VRAACAATGG------
 A C G T A C G T A C G T T C G A T G A C G T C A G T C A C G A T A C T G A T C G A G T C G T C A A C G T A C G T A C G T G A T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----ACAATGGCATTTC
AATGAACAATGGAATT--
 A C G T A C G T A C G T A C G T A C G T T C G A T G A C G T C A G T C A C G A T A C T G A T C G A G T C G T C A A C G T A C G T A C G T G A T C
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T A C G T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ACAATGGCATTTC-
TTGAATGAAATTCGA
 A C G T T C G A T G A C G T C A G T C A C G A T A C T G A T C G A G T C G T C A A C G T A C G T A C G T G A T C A C G T
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ACAATGGCATTTC
RAACAATGGN-----
 A C G T A C G T T C G A T G A C G T C A G T C A C G A T A C T G A T C G A G T C G T C A A C G T A C G T A C G T G A T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ACAATGGCATTTC
ACAAAGGNBCCT-
 T C G A T G A C G T C A G T C A C G A T A C T G A T C G A G T C G T C A A C G T A C G T A C G T G A T C
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGCATTTC
RACAAWGG------
 A C G T T C G A T G A C G T C A G T C A C G A T A C T G A T C G A G T C G T C A A C G T A C G T A C G T G A T C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGCATTTC
VRRACAAWGG------
 A C G T A C G T A C G T T C G A T G A C G T C A G T C A C G A T A C T G A T C G A G T C G T C A A C G T A C G T A C G T G A T C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ACAATGGCATTTC
GAACAATGGN-----
 A C G T A C G T T C G A T G A C G T C A G T C A C G A T A C T G A T C G A G T C G T C A A C G T A C G T A C G T G A T C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGCATTTC
AACAAAGG------
 A C G T T C G A T G A C G T C A G T C A C G A T A C T G A T C G A G T C G T C A A C G T A C G T A C G T G A T C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T