Information for 9-CTTCCAGACHTCT (Motif 5)

A G T C A C G T A G C T A T G C A G T C C G T A A C T G C G T A A G T C G C T A A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A C A G T A C T G A C G T A G T C C G A T A C T G A T C G C T G A C G T A A C T G
p-value:1e-13
log p-value:-3.021e+01
Information Content per bp:1.876
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.8 +/- 31.6bp
Average Position of motif in Background45.9 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTTCCAGACHTCT--
CAAATCCAGACATCACA
 A C G T A C G T A G T C A C G T A G C T A T G C A G T C C G T A A C T G C G T A A G T C G C T A A C G T A G T C A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTTCCAGACHTCT
---CCAGACRSVB
 A G T C A C G T A G C T A T G C A G T C C G T A A C T G C G T A A G T C G C T A A C G T A G T C A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTTCCAGACHTCT
---CCAGACAG--
 A G T C A C G T A G C T A T G C A G T C C G T A A C T G C G T A A G T C G C T A A C G T A G T C A C G T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTTCCAGACHTCT
ATGCCAGACN---
 A G T C A C G T A G C T A T G C A G T C C G T A A C T G C G T A A G T C G C T A A C G T A G T C A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTTCCAGACHTCT------
--CCNNACCATCTGGCCTN
 A G T C A C G T A G C T A T G C A G T C C G T A A C T G C G T A A G T C G C T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CTTCCAGACHTCT
-----TGACCYCT
 A G T C A C G T A G C T A T G C A G T C C G T A A C T G C G T A A G T C G C T A A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTTCCAGACHTCT
---BCAGACWA--
 A G T C A C G T A G C T A T G C A G T C C G T A A C T G C G T A A G T C G C T A A C G T A G T C A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

PROX1/MA0794.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTTCCAGACHTCT--
---CAAGACGCCTTA
 A G T C A C G T A G C T A T G C A G T C C G T A A C T G C G T A A G T C G C T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

PB0126.1_Gata5_2/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTTCCAGACHTCT-----
-NNNCTGATATCTCNNNN
 A G T C A C G T A G C T A T G C A G T C C G T A A C T G C G T A A G T C G C T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:10
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------CTTCCAGACHTCT
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G C T A T G C A G T C C G T A A C T G C G T A A G T C G C T A A C G T A G T C A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T