Information for 7-TTATTCAACATGA (Motif 2)

A G C T A C G T C G T A A C G T A C G T G T A C C G T A G C T A G T A C G T C A A G C T A C T G C T G A
Reverse Opposite:
A G C T G T A C T C G A A C G T A C T G C A G T A C G T A C T G C G T A C G T A C G A T G T C A C T G A
p-value:1e-18
log p-value:-4.211e+01
Information Content per bp:1.799
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.8 +/- 32.5bp
Average Position of motif in Background62.2 +/- 6.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTATTCAACATGA
GAATATTCAT-----
 A C G T A C G T A G C T A C G T C G T A A C G T A C G T G T A C C G T A G C T A G T A C G T C A A G C T A C T G C T G A
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTATTCAACATGA
-NATTCAAAT---
 A G C T A C G T C G T A A C G T A C G T G T A C C G T A G C T A G T A C G T C A A G C T A C T G C T G A
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TTATTCAACATGA
AATCAATTCAATAATT
 A C G T A C G T A C G T A G C T A C G T C G T A A C G T A C G T G T A C C G T A G C T A G T A C G T C A A G C T A C T G C T G A
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTATTCAACATGA
RTTATGYAAB----
 A C G T A G C T A C G T C G T A A C G T A C G T G T A C C G T A G C T A G T A C G T C A A G C T A C T G C T G A
T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTATTCAACATGA
GHATATKCAT-----
 A C G T A C G T A G C T A C G T C G T A A C G T A C G T G T A C C G T A G C T A G T A C G T C A A G C T A C T G C T G A
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTATTCAACATGA-----
WNAGTCADAVTGAAACTN
 A G C T A C G T C G T A A C G T A C G T G T A C C G T A G C T A G T A C G T C A A G C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TTATTCAACATGA---
-CTTTCANTATGACTV
 A G C T A C G T C G T A A C G T A C G T G T A C C G T A G C T A G T A C G T C A A G C T A C T G C T G A A C G T A C G T A C G T
A C G T A T G C G A C T A G C T A G C T A G T C G C T A C A G T C G A T G C T A A C G T A C T G G C T A T A G C G C A T T G A C

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TTATTCAACATGA
NNATGASTCATH----
 A C G T A C G T A C G T A G C T A C G T C G T A A C G T A C G T G T A C C G T A G C T A G T A C G T C A A G C T A C T G C T G A
A C T G C T A G T C G A C G A T C A T G G C T A A T C G C G A T G T A C G C T A A G C T G T A C A C G T A C G T A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TTATTCAACATGA-
AGTTATTAATGAGGTC
 A C G T A C G T A G C T A C G T C G T A A C G T A C G T G T A C C G T A G C T A G T A C G T C A A G C T A C T G C T G A A C G T
G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

PB0197.1_Zfp105_2/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TTATTCAACATGA
NAAANTTATTGAANCAN-
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T C G T A A C G T A C G T G T A C C G T A G C T A G T A C G T C A A G C T A C T G C T G A
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T A C G T