Information for 14-GGCCATAAAG (Motif 20)

A C T G A C T G A G T C A G T C C G T A A C G T G T C A C G T A C G T A C T A G
Reverse Opposite:
A G T C A C G T A C G T A C G T C G T A A C G T A C T G A C T G A G T C A G T C
p-value:1e-6
log p-value:-1.409e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets64.2 +/- 24.5bp
Average Position of motif in Background37.9 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GGCCATAAAG
AAGCCATAAAA
 A C G T A C T G A C T G A G T C A G T C C G T A A C G T G T C A C G T A C G T A C T A G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GGCCATAAAG---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T G T C A C G T A C G T A C T A G A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0056.1_Hoxa9/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GGCCATAAAG-----
ACGGCCATAAAATTAAT
 A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T G T C A C G T A C G T A C T A G A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GGCCATAAAG--
NGYCATAAAWCH
 A C T G A C T G A G T C A G T C C G T A A C G T G T C A C G T A C G T A C T A G A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GGCCATAAAG
-GCAATAAAA
 A C T G A C T G A G T C A G T C C G T A A C G T G T C A C G T A C G T A C T A G
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GGCCATAAAG
GGCCATTAAC
 A C T G A C T G A G T C A G T C C G T A A C G T G T C A C G T A C G T A C T A G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GGCCATAAAG-
-GTCATAAAAN
 A C T G A C T G A G T C A G T C C G T A A C G T G T C A C G T A C G T A C T A G A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GGCCATAAAG--
GGCCATAAATCA
 A C T G A C T G A G T C A G T C C G T A A C G T G T C A C G T A C G T A C T A G A C G T A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---GGCCATAAAG---
TAAGGTAATAAAATTA
 A C G T A C G T A C G T A C T G A C T G A G T C A G T C C G T A A C G T G T C A C G T A C G T A C T A G A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGCCATAAAG--
GGCCATAAATCA
 A C T G A C T G A G T C A G T C C G T A A C G T G T C A C G T A C G T A C T A G A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A