Information for 10-MGGYCWGWTTTCT (Motif 9)

G T C A A C T G T A C G A G T C A G T C C G A T A C T G C G T A A C G T A C G T A C G T T A G C A C G T
Reverse Opposite:
G T C A A T C G C G T A C G T A C G T A C G A T A G T C C G T A A C T G T C A G A T G C G T A C A C G T
p-value:1e-12
log p-value:-2.992e+01
Information Content per bp:1.760
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.16%
Number of Background Sequences with motif88.5
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets52.6 +/- 27.6bp
Average Position of motif in Background52.5 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:MGGYCWGWTTTCT----
-----TGATTTATGGCC
 G T C A A C T G T A C G A G T C A G T C C G A T A C T G C G T A A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:MGGYCWGWTTTCT---
-----TGATTTATGGC
 G T C A A C T G T A C G A G T C A G T C C G A T A C T G C G T A A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:MGGYCWGWTTTCT----
----NTGATTTATGGCC
 G T C A A C T G T A C G A G T C A G T C C G A T A C T G C G T A A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:MGGYCWGWTTTCT
--CNGTGATTTN-
 G T C A A C T G T A C G A G T C A G T C C G A T A C T G C G T A A C G T A C G T A C G T T A G C A C G T
A C G T A C G T A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:MGGYCWGWTTTCT----
-----TGATTTATGGCC
 G T C A A C T G T A C G A G T C A G T C C G A T A C T G C G T A A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PH0037.1_Hdx/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:MGGYCWGWTTTCT----
TNNNATGATTTCNNCNN
 G T C A A C T G T A C G A G T C A G T C C G A T A C T G C G T A A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:MGGYCWGWTTTCT----
-----DGWTTTATGRCN
 G T C A A C T G T A C G A G T C A G T C C G A T A C T G C G T A A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PB0126.1_Gata5_2/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:MGGYCWGWTTTCT-----
-NNNCTGATATCTCNNNN
 G T C A A C T G T A C G A G T C A G T C C G A T A C T G C G T A A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:MGGYCWGWTTTCT---
------NTTTTATGAC
 G T C A A C T G T A C G A G T C A G T C C G A T A C T G C G T A A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:MGGYCWGWTTTCT
TGCTGTGATTT--
 G T C A A C T G T A C G A G T C A G T C C G A T A C T G C G T A A C G T A C G T A C G T T A G C A C G T
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T