Information for 3-TGTGATGVATGAC (Motif 4)

C A G T C A T G A C G T T C A G C G T A A C G T A C T G T C G A G T C A A C G T A C T G C G T A G T A C
Reverse Opposite:
A C T G G A C T T G A C C G T A A C G T A G C T G T A C G T C A C G A T A G T C G T C A G A T C G T C A
p-value:1e-21
log p-value:-4.854e+01
Information Content per bp:1.681
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.20%
Number of Background Sequences with motif221.2
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets41.3 +/- 18.7bp
Average Position of motif in Background46.6 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:TGTGATGVATGAC
-ATGATKGATGRC
 C A G T C A T G A C G T T C A G C G T A A C G T A C T G T C G A G T C A A C G T A C T G C G T A G T A C
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.81
Offset:2
Orientation:forward strand
Alignment:TGTGATGVATGAC-
--TGATTRATGGCY
 C A G T C A T G A C G T T C A G C G T A A C G T A C T G T C G A G T C A A C G T A C T G C G T A G T A C A C G T
A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:TGTGATGVATGAC
--TGATTGATGA-
 C A G T C A T G A C G T T C A G C G T A A C G T A C T G T C G A G T C A A C G T A C T G C G T A G T A C
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TGTGATGVATGAC
--TGATTTATGGC
 C A G T C A T G A C G T T C A G C G T A A C G T A C T G T C G A G T C A A C G T A C T G C G T A G T A C
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:5
Score:0.67
Offset:7
Orientation:forward strand
Alignment:TGTGATGVATGAC
-------CATGAC
 C A G T C A T G A C G T T C A G C G T A A C G T A C T G T C G A G T C A A C G T A C T G C G T A G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGATGVATGAC
NNNNNATTGATGNGTGN-
 A C G T A C G T A C G T A C G T A C G T C A G T C A T G A C G T T C A G C G T A A C G T A C T G T C G A G T C A A C G T A C T G C G T A G T A C
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGTGATGVATGAC-
--TGATTTATGGCC
 C A G T C A T G A C G T T C A G C G T A A C G T A C T G T C G A G T C A A C G T A C T G C G T A G T A C A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGTGATGVATGAC
TTTGATTGATGN-
 C A G T C A T G A C G T T C A G C G T A A C G T A C T G T C G A G T C A A C G T A C T G C G T A G T A C
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGTGATGVATGAC
NNTNTCATGAATGT-
 A C G T A C G T C A G T C A T G A C G T T C A G C G T A A C G T A C T G T C G A G T C A A C G T A C T G C G T A G T A C
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGTGATGVATGAC-
--TGATTTATGGCC
 C A G T C A T G A C G T T C A G C G T A A C G T A C T G T C G A G T C A A C G T A C T G C G T A G T A C A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C