Information for 7-CCTCTTGTGGCCA (Motif 9)

A G T C G T A C A G C T A T G C A C G T A C G T T A C G C A G T A C T G T A C G A T G C A G T C C G T A
Reverse Opposite:
C G A T A C T G A T C G A G T C G T A C G T C A A T G C T C G A T C G A A T C G C T G A A C T G A C T G
p-value:1e-13
log p-value:-3.004e+01
Information Content per bp:1.773
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif47.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets49.4 +/- 25.9bp
Average Position of motif in Background56.2 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------CCTCTTGTGGCCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T A T G C A C G T A C G T T A C G C A G T A C T G T A C G A T G C A G T C C G T A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------CCTCTTGTGGCCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T A T G C A C G T A C G T T A C G C A G T A C T G T A C G A T G C A G T C C G T A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTTGTGGCCA
TGWCCTCARNTGACC-
 A C G T A C G T A C G T A G T C G T A C A G C T A T G C A C G T A C G T T A C G C A G T A C T G T A C G A T G C A G T C C G T A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.60
Offset:-9
Orientation:forward strand
Alignment:---------CCTCTTGTGGCCA
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T A T G C A C G T A C G T T A C G C A G T A C T G T A C G A T G C A G T C C G T A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCTCTTGTGGCCA
-RTCATGTGAC--
 A G T C G T A C A G C T A T G C A C G T A C G T T A C G C A G T A C T G T A C G A T G C A G T C C G T A
A C G T T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTTGTGGCCA
CCCCCTGCTGTG----
 A C G T A C G T A C G T A G T C G T A C A G C T A T G C A C G T A C G T T A C G C A G T A C T G T A C G A T G C A G T C C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCTCTTGTGGCCA-----
--GGGTGTGCCCAAAAGG
 A G T C G T A C A G C T A T G C A C G T A C G T T A C G C A G T A C T G T A C G A T G C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTTGTGGCCA-
TGACCTTTCGTGACCTT
 A C G T A C G T A C G T A G T C G T A C A G C T A T G C A C G T A C G T T A C G C A G T A C T G T A C G A T G C A G T C C G T A A C G T
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

PLAG1/MA0163.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCTCTTGTGGCCA-
CCCCCTTGGGCCCC
 A G T C G T A C A G C T A T G C A C G T A C G T T A C G C A G T A C T G T A C G A T G C A G T C C G T A A C G T
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------CCTCTTGTGGCCA
TGCAGTTCCNNNNNTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T A T G C A C G T A C G T T A C G C A G T A C T G T A C G A T G C A G T C C G T A
C G A T T A C G G A T C G C T A T C A G G A C T C G A T G T A C G A T C G T C A T C G A T G A C C G T A C T A G G A C T C T A G C T A G G T A C A G T C C G T A